Pairwise Alignments

Query, 1048 a.a., CzcA family heavy metal efflux protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1056 a.a., heavy metal efflux pump (cobalt-zinc-cadmium) from Pseudomonas stutzeri RCH2

 Score =  625 bits (1612), Expect = 0.0
 Identities = 355/1054 (33%), Positives = 593/1054 (56%), Gaps = 30/1054 (2%)

Query: 1    MLDYIIKSSIRQRFMVLVVALMVTLWGITELKRTPLDALPDLSDVQVIIKTSFPGQAPQL 60
            M + II+ SI  R++V++  L +   G    ++ P+DA+PD+++VQV I T+ PG +P  
Sbjct: 1    MFERIIRFSIEHRWLVMLAVLGMAALGAYSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60

Query: 61   VEEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQVRTR 120
            VE+++TYPL T M  +P  +  R  S +G S + VIFE+GTDIY+AR  V E L   + +
Sbjct: 61   VEQRITYPLETVMAGLPKLEQTRSLSRYGLSQITVIFEEGTDIYFARQLVNERLGGAKDQ 120

Query: 121  LPAGVEPSLGPDASGVGWVYEYALVDRSGNLDL-------SQLKSLQDWYLKLELQSVEG 173
            LP GV P+LGP ++G+G +Y + +    G           + L+ +QDW +K ++++V G
Sbjct: 121  LPDGVTPTLGPISTGLGEIYFWTVEAEEGATKSDGTPYTPADLREIQDWIIKPQVRNVPG 180

Query: 174  VSEVATVGGMEQTYQIVLEPDKLAIYKLDIATIKAAITRANSEAGGSVVEMAEAEYMVRA 233
            V+E+ T+GG  + YQI   PD L  + L +  +  A+ + N+  G   +E    +Y+VRA
Sbjct: 181  VTEINTIGGYAKEYQIAPNPDTLRSFGLTLQDLIEAVEQNNNNLGAGYIEKRGEQYLVRA 240

Query: 234  KGYRQTLDDFREIPLGITTGAGTPLLLKDVATIRKGPASRRGIAELDGEGEVVGGIIVMR 293
             G  Q+++D R+    I+   GTP+ ++DVAT+  G   R G A  +G  EVV G   M 
Sbjct: 241  PGQMQSVEDIRDTL--ISNVDGTPVRIRDVATVEVGKELRTGAATENGR-EVVLGTAFML 297

Query: 294  YGENALATIDAVKAKLDELKAGLPDGVEIVPTYDRSQLIQNSVDNLLTKVVEEMLVVGLV 353
             GEN+     AV  K+ E+   LP+GV+ +  YDR+ L+  ++  +   + E  ++V ++
Sbjct: 298  IGENSRVVSRAVDDKMKEINLSLPEGVKAITVYDRTVLVDKAISTVKKNLTEGAILVVVI 357

Query: 354  CLLFLLHARSTLVAVFTLPLSILIAFIVMNHMGINANIMSLGGIAIAIGAVVDGAIVMIE 413
              LFL + R+ ++    +PLS+L  F  M    ++AN+MSLG  A+  G ++DGA+V++E
Sbjct: 358  LFLFLGNIRAAILTALVIPLSMLFTFTGMVANQVSANLMSLG--ALDFGIIIDGAVVIVE 415

Query: 414  NLHKHLEHFKRQHEREPSTREHWEVVTQASLEVGPALFFSLLIITLSFIPVFALEAQEGR 473
            N  + L H +  H R  +  E    V  A+ EV   L +  LII + ++P+FAL   EG+
Sbjct: 416  NCVRRLAHAQSHHGRALTLSERLHEVFAAAKEVRRPLLYGQLIIMIVYLPIFALTGVEGK 475

Query: 474  LFAPLAYTKTFAMAAASVLAITLVPVLMGYFIRGKIPSEEANPISRFLIALYKPALNKVL 533
            +F P+A+T   A+  A +L++T VP  +  FI GK  +E+ N + R     Y PAL+ V+
Sbjct: 476  MFTPMAFTVVTALFGAIILSVTFVPAAVALFI-GKRVTEKENFLIRNAKRAYAPALDAVM 534

Query: 534  AFPKLTLLVALLALASVVYPASRMGSEFMPELEEGDLLYMPTALPGISAGKAAEILQQTD 593
            A     L  A++ +       SRMGSEF+P L EGD       +P  S  ++ E+ QQ +
Sbjct: 535  ANKPAVLTFAVVVVILSGLVGSRMGSEFVPSLNEGDFAIQALRVPATSLSQSVEMQQQLE 594

Query: 594  R-LIKTVPEVARVFGKIGRAETATDPAPLTMLETTIMLKPRQEWRE-GINLNDIVDELQR 651
            R L+   PE+ R+F + G AE A+D  P  + +  +MLKP+++W + G + N ++ E+Q 
Sbjct: 595  RKLMDEFPEIERIFARTGTAEVASDAMPPNISDGYVMLKPQEQWPDPGKSRNQLLSEVQA 654

Query: 652  T-VKVPGLTNAWVQPIKTRIDMLSTGIKTPVGIKITGANVDELQQIGANVEAILAALPNT 710
            +  ++PG    + QPI+ R + L +G++  V +KI G ++D L    A V  +L  +P  
Sbjct: 655  SAAELPGNNYEFSQPIQLRFNELISGVRAAVAVKIYGDDMDVLNSTAAEVSEVLGQVPGA 714

Query: 711  RSAYAERAGGGRYIDIAPKLDVASRYGMTLNDIQDVVRYAIGGMNVGESVQGAERYPINL 770
                 E+  G   + I    D  +RYG++L+ +Q  V  AIGG   G   QG  R+ I +
Sbjct: 715  SEVTVEQTTGLPMLTIDIDRDQIARYGLSLDTVQQAVAVAIGGREAGTLFQGDRRFDIVV 774

Query: 771  RYPRELRDSLEKLRALPV-----ITKSGHYLPLGNLADIQISDGPPMLKSENGRLISWVF 825
            R P E+R  L  +  LP+     +  +  Y+PLG +A + ++ GP  +  E G+    V 
Sbjct: 775  RLPDEIRSDLAAIERLPIALPRELNSTISYIPLGEVATLDLAPGPNQISREEGKRRIVVS 834

Query: 826  VDIQGTSIGEYIQTAKSALEAELNLPPRYSYSFAGQYEYMQRVDAKLKQVVPLAIGIIFI 885
             +++G  IG ++  A+  ++A++++P  Y   + G +E ++    +L+ VVP+A+ ++FI
Sbjct: 835  ANVRGRDIGSFVSEAEQKIQAQVDIPAGYWIDWGGTFEQLESATKRLQIVVPVALLLVFI 894

Query: 886  LLMLTFGSGKQASMIMLSLPFALVGSTWLLYLLDYNLSVAVAVGMIALAGVAAEFGVVML 945
            LL + F + K   ++   +PFAL G    L+L D  LS++  VG IAL+GVA   G+VM+
Sbjct: 895  LLFMMFNNVKDGLLVFTGIPFALTGGIVALWLRDIPLSISAGVGFIALSGVAVLNGLVMI 954

Query: 946  VYLNNAIKDRDALGHYHNESDLKAALVEGAVMRIRPKAMTVATIFFGLLPIMWGAGSGNE 1005
             ++  +++++           L  A+ EGA+ R+RP  MT      G +P+    G+G E
Sbjct: 955  SFI-RSLREQGL--------PLDTAIREGALTRLRPVLMTALVASLGFVPMALNVGTGAE 1005

Query: 1006 VMQKIAAPMVGGMVTAPLLSLFVLPALYLLVYRK 1039
            V + +A  ++GG++++ +L+L VLP LY + +R+
Sbjct: 1006 VQRPLATVVIGGILSSTVLTLLVLPLLYQMAHRR 1039



 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 78/343 (22%), Positives = 142/343 (41%), Gaps = 34/343 (9%)

Query: 719  GGGRYIDIAPKLDVASRYGMTLNDIQDVVRYAIGGMNVGESVQGAERYPINLRYPRELRD 778
            G  +   IAP  D    +G+TL D+ + V      +  G   +  E+Y +  R P +++ 
Sbjct: 189  GYAKEYQIAPNPDTLRSFGLTLQDLIEAVEQNNNNLGAGYIEKRGEQYLV--RAPGQMQ- 245

Query: 779  SLEKLRALPVITKSGHYLPLGNLADIQIS-DGPPMLKSENGRLISWVFVDIQGTS---IG 834
            S+E +R   +    G  + + ++A +++  +      +ENGR +      + GT+   IG
Sbjct: 246  SVEDIRDTLISNVDGTPVRIRDVATVEVGKELRTGAATENGREV------VLGTAFMLIG 299

Query: 835  EYIQTAKSALE---AELNLPPRYSYSFAGQYEYMQRVDAKLKQVVP-LAIG--IIFILLM 888
            E  +    A++    E+NL           Y+    VD  +  V   L  G  ++ ++L 
Sbjct: 300  ENSRVVSRAVDDKMKEINLSLPEGVKAITVYDRTVLVDKAISTVKKNLTEGAILVVVILF 359

Query: 889  LTFGSGKQASMIMLSLPFALVGSTWLLYLLDYNLSVAVAVGMIALAGVAAEFGVVM---L 945
            L  G+ + A +  L +P ++        L  +   VA  V    ++  A +FG+++   +
Sbjct: 360  LFLGNIRAAILTALVIPLSM--------LFTFTGMVANQVSANLMSLGALDFGIIIDGAV 411

Query: 946  VYLNNAIKD-RDALGHYHNESDLKAALVE--GAVMRIR-PKAMTVATIFFGLLPIMWGAG 1001
            V + N ++    A  H+     L   L E   A   +R P       I    LPI    G
Sbjct: 412  VIVENCVRRLAHAQSHHGRALTLSERLHEVFAAAKEVRRPLLYGQLIIMIVYLPIFALTG 471

Query: 1002 SGNEVMQKIAAPMVGGMVTAPLLSLFVLPALYLLVYRKRFAAK 1044
               ++   +A  +V  +  A +LS+  +PA   L   KR   K
Sbjct: 472  VEGKMFTPMAFTVVTALFGAIILSVTFVPAAVALFIGKRVTEK 514