Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 625 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas aeruginosa PA14

 Score =  313 bits (803), Expect = 1e-89
 Identities = 222/612 (36%), Positives = 322/612 (52%), Gaps = 50/612 (8%)

Query: 9   LADSWRRSEGAGLSETR--PGELK----LSRVELDERCERHRQLIALVESEALPLFTRLM 62
           + DSWRRS    + + R  PG L+    LS+  LDE C    +L   + SE +      +
Sbjct: 32  ILDSWRRS----MEQHRLDPGSLQGPRILSQTLLDE-CRERSELFLRIASEEVARLHGRV 86

Query: 63  AHTDSRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEAL 122
              D  ++L+DA+G  + +   S   +      L  G  W E  +GT  +   L  + A+
Sbjct: 87  RDADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAV 146

Query: 123 SVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSL----AQQ 178
           +V    HF      ++C+A+P+F P GEL+G LD+++ +   ++++  LI  +    A++
Sbjct: 147 TVHKRDHFRAAFIDLTCSAAPVFDPQGELLGVLDVSAVQSPDDRRSQHLIRQMVAQSARE 206

Query: 179 VETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLG---GASP 235
           +E A       G + +    +   + S    +   D +GRLL LNP AR YL    G  P
Sbjct: 207 IENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDADGRLLALNPAARHYLRQRLGQVP 266

Query: 236 GMQLGELLGDDW---RAQQAQCL----RGELHLATSAIGEGALWIQTNKASSLHGVKPLR 288
              +GE+   D     A QA CL     GELH+  SA    A  ++         V    
Sbjct: 267 S-HIGEVFDLDALHAAADQAPCLLRGQAGELHVRLSAPRAKARRLERE-------VPDDA 318

Query: 289 FHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDS-RLDGELVAVNCAALP 347
             DP++  + + A +V  R +P+L+QGETG GKE F RQL+Q S R D   VA+NCAA+P
Sbjct: 319 ALDPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIP 378

Query: 348 TELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQERE 407
             LIE+ELFGY GGAFTGA+ +G  G ++QADGG LFLDEIG++PL  Q RLLRVL E E
Sbjct: 379 ESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGE 438

Query: 408 VTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRL 467
           V P+G  +   VDIQV+ ATH DLA +V  G FREDLYFRL G +  LPPLR+R+D+  L
Sbjct: 439 VAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLAL 498

Query: 468 IHKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAH 527
           I ++  +   +  G    L    L  L  Y WPGN+R+L ++++ AC +  G    +   
Sbjct: 499 IRRILDEETAH-CGVRIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGG----ATLQ 553

Query: 528 LSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLG 587
           L+D      + A     GR  + + +S       A LD  +++           AAR LG
Sbjct: 554 LAD------LPAELRGEGRTPASACESGGGPERDALLDALVRHRWKP-----MAAARELG 602

Query: 588 VSRNLIYRSLKR 599
           +SR  +YR ++R
Sbjct: 603 ISRATLYRRVRR 614