Pairwise Alignments

Query, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

 Score =  368 bits (944), Expect = e-106
 Identities = 231/620 (37%), Positives = 340/620 (54%), Gaps = 41/620 (6%)

Query: 9   LADSWRRSEGAGLS-ETRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTDS 67
           +ADSW R    GL  +  P  LK     L+E   +H +L+++ E+E LP +  +++++  
Sbjct: 13  IADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSRC 72

Query: 68  RLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGE 127
            ++L+D    VL  WG  R ++         G NW E++ GTNAIGT++     + +   
Sbjct: 73  LILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQIQRN 132

Query: 128 QHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVETALLCSL 187
           +HF + +R +  +A+PIF    ++ G L + S+       TL ++  L+Q VE  L+   
Sbjct: 133 EHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENRLINRQ 192

Query: 188 PG-GRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLGELLGDD 246
            G   F++ L  +     S W GIL+ DD G+++  N  A Q LG  +   +L EL    
Sbjct: 193 FGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDELFTRH 252

Query: 247 WRAQQAQCLRGELHLAT-SAIGEGALWIQTNKASSLHG-VKP------------------ 286
                       L L T S +   A   +  +    +G  KP                  
Sbjct: 253 RNHILGHPETETLQLTTRSKVRLSARIKRPTRIPDANGKTKPSPVPEDLRQSARPLDIDN 312

Query: 287 LRFHDPQLETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDS-RLDGELVAVNCAA 345
           L + D  ++    Q+ KV+ R +P+L+ GETGVGKE  V+ L++ S R D  LVAVNCAA
Sbjct: 313 LDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQPLVAVNCAA 372

Query: 346 LPTELIEAELFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQE 405
           +P EL+E+ELFGY+ GAFTGA  QG LG +R+A  G LFLDEIGE+PL+AQ RLLRVLQE
Sbjct: 373 IPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQSRLLRVLQE 432

Query: 406 REVTPVGGLKSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKS 465
           R VTPVG   S  VDI +V AT+  L   + +G FR DLY+R+NGL V LP LR RAD+ 
Sbjct: 433 RVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELPALRNRADRR 492

Query: 466 RLIHKLHRQYRVNPPGDEQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGER---- 521
            LI  L+ ++R   PG  ++L P++L+ LEA+ WPGN+R+L N+++VA  +A+GE+    
Sbjct: 493 MLIQSLYARHR--DPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIADGEQVQVW 550

Query: 522 ELSQAHLSDAHRRALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTL---ADCDGN 578
            L +  L++     L Q+ P           Q    +  +AE +  +  TL     C GN
Sbjct: 551 HLPEDFLAEFEANPLEQSDP---------PMQEQPVAGSEAETEDTLARTLQIYRKCTGN 601

Query: 579 ISEAARRLGVSRNLIYRSLK 598
           IS+AAR L +SRN +Y+ L+
Sbjct: 602 ISQAARELSISRNTLYKRLR 621