Pairwise Alignments

Query, 189 a.a., outer membrane protein, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 350 a.a., porin OmpA from Escherichia coli Nissle 1917

 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 32/208 (15%)

Query: 1   MNKMKLAALAAL--IASTGAMAETDNTGFYVGGAI--NQVKASG----DGEGSSDGVGFG 52
           M K  +A   AL   A+    A  DNT +Y G  +  +Q   +G    +G    + +G G
Sbjct: 1   MKKTAIAIAVALAGFATVAQAAPKDNT-WYTGAKLGWSQYHDTGFIPNNGPTHENQLGAG 59

Query: 53  AYGGYNFNEWFGLEANLFASGDLGEDGVDVG----AGALTFTPKFTYHFNDTFSAFAKVG 108
           A+GGY  N + G E      G +   G ++     A  +  T K  Y   D    + ++G
Sbjct: 60  AFGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTAKLGYPITDDLDIYTRLG 119

Query: 109 -----VASMAVVVDYGPFDADYTGWGLTWGVGVNAALTEKLNLRLSYDETR--GDLDEDG 161
                  + A V     F    TG    +  GV  A+T ++  RL Y  T   GD    G
Sbjct: 120 GMVWRADTKANVPGGASFKDHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIG 179

Query: 162 FWFDNDYYNGEIDNVKISQISLGLHYQF 189
              DN              +SLG+ Y+F
Sbjct: 180 TRPDN------------GMLSLGVSYRF 195