Pairwise Alignments

Query, 639 a.a., putative diguanylate phosphodiesterase (RefSeq) from Shewanella amazonensis SB2B

Subject, 730 a.a., PAS domain S-box protein from Pseudomonas aeruginosa PA14

 Score = 92.8 bits (229), Expect = 5e-23
 Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 32/402 (7%)

Query: 199 IPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVDQVSGLPNRQYLVGRINSW 258
           I +  E+  VV+  + M+ + +Q  + L  + T        D ++GL NR+    R+   
Sbjct: 256 IHRGGEITGVVLVLHDMTRE-RQYMARLSWQATH-------DALTGLTNRREFEYRLQIA 307

Query: 259 LSE----PGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQSQLEEIAPGVVARIA 314
           L       G  AL     D  + V+   G+   DE ++ +   LQ  L E     +AR+ 
Sbjct: 308 LERLERNSGRHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLRE--GDTLARLG 365

Query: 315 AFEFAFLVFDVDKELISKYLQTLIRTVNQEISKAGGKP-NEHFAIGIAERI-GSMTVSDI 372
             EF  L+ +   E   +    L +TV        G+P N   ++G+   + G  T+ + 
Sbjct: 366 GDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTLEEA 425

Query: 373 LAQSDNALQTAIKSGK----VYHWFESSEEQMFTREQWREKLSSAINAKLFQFRWQPI-Q 427
           L  +D A   A + G+    V+H  +      F    W +++  A+    F    QPI  
Sbjct: 426 LRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQPIVP 485

Query: 428 LTDGAGLLQH-ELYCQL-EIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIHLLERN 485
           L +GA    H EL  +L + G +L     F+P  E   L  L+D+ +++      L+ER 
Sbjct: 486 LGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRT-LVERA 544

Query: 486 FEP-------VAINLTHQSLTDTDFHQWLQQ-FLRSTPLADRLCFDIPESGVYSNPEACE 537
            +P        AINL+  ++ D  F Q+L + F R       +CF++ E+   +N  +  
Sbjct: 545 QDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLASAI 604

Query: 538 ALCAIIRDNGAKFGIDHFGRQFGSMSYLQTLRPSYVKLDQSF 579
                ++D G +F +D F     S  YL+ L   Y+K+D SF
Sbjct: 605 RFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSF 646