Pairwise Alignments

Query, 624 a.a., GGDEF domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 643 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  253 bits (646), Expect = 2e-71
 Identities = 189/574 (32%), Positives = 293/574 (51%), Gaps = 30/574 (5%)

Query: 59  DPRWQQLPKQGTHGMGAQNRWLRIDIDVRTHPGSR-VLSINNPLLDNL--RLYHLVNGNL 115
           D +WQ L K    G      WLR  +        R  L +  P+LD +  RL++  +   
Sbjct: 61  DLQWQALTKPNL-GKQRDGAWLRFTLYNEGAEAKRWYLLLKWPVLDRVAVRLHYPDSDRW 119

Query: 116 MTEHHFGDSLPFDERLLLSTQFLYPLQLRPWEHHTLLLRVDTEGSSHVPLTLMTPGHLSQ 175
                 GD+L    R L    F+YPL+L   E   + +++       +PL L+    L +
Sbjct: 120 GQPMLAGDALALSVRPLADHHFVYPLELPAGEPVVVYMQLQAREILALPLELIDDKQLIE 179

Query: 176 -MLESRNLVQGFQLGILAAIGLFSLFVALASGSFSYSYYAAYVLSMTLLVASLQGVAFRY 234
             L    LV  F  GIL  + L++  + + +   SY  Y  Y+LS    V ++ G    Y
Sbjct: 180 GKLRDVTLVSLFFGGILVIV-LYNCSLLIFTRDRSYFLYVLYLLSAVFYVLTITGFGQLY 238

Query: 235 LWPQLPAMQAWVIPFLLPLVMCFALMFAEKVLQLKYLNIRMLR--ICRFSATFSLF--LA 290
           LWP++P + A    + L   +CF   F   +  L++L IR     +   S T + +  L 
Sbjct: 239 LWPEIPELSARF--YGLSAALCF---FTPMLFALRFLGIRRYGGWVWAVSITLTCYWGLV 293

Query: 291 LLSPFISYSLAMYC--DLVALLGIAVVLLAFALVQALRGQKLARLYFVGWIVFLASVIVT 348
            L+  ++ +LA Y   + VALL   V+ +A  L    RG + ARL+ + W   L   ++ 
Sbjct: 294 ALTILLAPTLARYLFMESVALLH-CVLTMAVTLNLWARGNQSARLFSIAWSTLLGFTVIN 352

Query: 349 SLIYLGAIQTTMEPLSPAMAGVTFEIVFMSLVLAIRYSDERKAKQRIQQEALEQAKRIRE 408
            L   G +      L+  + G+  E V +S+ LA R + ER  +   QQ AL+ ++ + E
Sbjct: 353 LLALNGTLPLNAWTLNGQLIGMFTEFVLLSMALAERINVERNRRIAAQQLALQASETLAE 412

Query: 409 -------AREEALKVEAESNERLEEMVQERTLELEIVLRELNEVNQKLTEQTTIDSLTGV 461
                  A++EAL ++  +NE LE  V ERT  LE V + L   N +LT  +T D+LT +
Sbjct: 413 ERALHLQAKQEALDLQLHTNEVLEARVYERTRALEEVRQGLEAANAELTRLSTTDALTQL 472

Query: 462 KNRAAFNKRLQAEGRISRRQQTPMALLMLDIDHFKNINDKYGHLAGDYTLKAIADTLSAQ 521
            NR  F++ L  E R +RR  +P+++L+ DIDHFK +ND YGH  GD  L+ +A  L+A 
Sbjct: 473 ANRRRFDRLLDEEIRRARRSGSPLSVLLADIDHFKRVNDGYGHPFGDECLRQVAAVLAAH 532

Query: 522 LRRPTDLVSRFGGEEFAIILPSTDAEGAVAVAEHIREAVEELTIKWEQFMIPLTVSIGVS 581
            +R  DL +R+GGEEF ++LP++D   A  +AE IR+ +E L +++    + LT+S+GV+
Sbjct: 533 CQRAGDLAARYGGEEFVVLLPASDQRQAFVLAERIRQNIERLQLRYGDQAVALTISLGVA 592

Query: 582 S--NIIESDEHPLQLLEQADKALYQAKHDGRNRV 613
           +    + S E    LL  AD ALY AKH GRN+V
Sbjct: 593 TLGPTVASAE---ALLATADAALYAAKHAGRNQV 623