Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 842 a.a., ribonuclease R (NCBI) from Rhodospirillum rubrum S1H

 Score =  385 bits (989), Expect = e-111
 Identities = 285/818 (34%), Positives = 407/818 (49%), Gaps = 87/818 (10%)

Query: 17  PIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAMERDGELVFTRGQCY 76
           P PSRE +LE++R+      R  IA A  I   ER + LR  L+ +E +G L   RG+  
Sbjct: 55  PFPSREQVLEFIRAANGEVDRREIARAFHITGPERAD-LRTLLKELESEGALQRGRGRRI 113

Query: 77  GLPERMDLMSGTVLGHKDGFG--FFRPDNGGDDLFINERDMQLYFH-------------- 120
             P  +  ++  ++   D  G  F +P++  +D    E   ++                 
Sbjct: 114 APPGSLPEVAVLIVARADAEGDLFCKPEHWPED----EEPPRILLWPEPHHARRPGVGAE 169

Query: 121 ---GDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEIL 177
              GD++LA+   +    R DAR +R L+   + L+G   +      +   ++R   E L
Sbjct: 170 IGVGDRILARLTRIG-DARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYL 228

Query: 178 IANEDKNGARHGDVVVIEL--TRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPH 235
           +A ED  GA  G++V  EL  +RR G       KV E LG +  P     + + ++D+P 
Sbjct: 229 VAPEDAGGAEPGELVEAELLPSRRLG---LRRAKVIERLGGREGPRSISLVVVHSHDIPV 285

Query: 236 QW--SAVIEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAE----RKR 289
            +   A+ E       +     D  GR DLR +PLVTIDGEDARDFDDAV+AE       
Sbjct: 286 DFPPEALAE------AEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPAN 339

Query: 290 GGGWRLWVAIADVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVD 349
            GGWR  VAIADV+HYVR  +ALDK AR RGNSVYFP +V+PMLPE LSNG CSL P  D
Sbjct: 340 PGGWRALVAIADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNED 399

Query: 350 RLCMVAEMTISAKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGG----EVKDEHKALFPH 405
           R C+   M   A+G    ++F   +M S AR TYTQV A  +G         + + + P 
Sbjct: 400 RGCLAVWMIFDAEGNKLRHRFLRGLMRSAARLTYTQVQAARDGHADDLTAPLQERVIAPL 459

Query: 406 LKVLQELYLCLDEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILA 465
             V Q L       R+ RG +  +  E + + ++  ++ RI PR R  +HK+IEE MI A
Sbjct: 460 YGVFQALL----GARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAA 515

Query: 466 NVAAAKFVIKHKGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQL 525
           NV+AA+ + + +   +YRVH++P+  KL    +FL    +    G       +  ++   
Sbjct: 516 NVSAAETLEEKRRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAA 575

Query: 526 AGRPDAELIQVMLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLL 585
            G P   ++  ++LRS  QA Y+PDN GHFGLAL  Y+HFTSPIRRY DL++HR +  + 
Sbjct: 576 RGTPHEHMVNEVVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRAL--IA 633

Query: 586 AKERGEASEKWTADGGYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGD 645
               G+       DG      E+        + TERRA +A RD  +     F+   VG 
Sbjct: 634 GLGLGD-------DGLRPGAEEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVGA 686

Query: 646 SFSGVIASVTSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDP 705
           +F+G I  VT  GLFV L++   DGL+ I SL +DY+ +D     L G+  G  + +G P
Sbjct: 687 TFAGRINGVTRAGLFVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDGLEFHLGAP 746

Query: 706 VAVKVASVNLDDRQIDLQMEGERPGRKKAGKKPTTARDRANLEGARTGNGKPGKGGSVRS 765
           V V +   N     +   +                      L+G   G  K G+G S ++
Sbjct: 747 VEVLLREANPVSGGLVFGL----------------------LQGGVAGAAK-GRGFSGKT 783

Query: 766 QLAGGKLGGSETKKRDAKAKDGKKPKKAAEAKPKAAKR 803
           +   G LG +  K+R A A    K KK A  KPKAA R
Sbjct: 784 KGRDG-LGKTRLKERGAAA----KLKKGARGKPKAAGR 816