Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 710 a.a., ribonuclease R from Pedobacter sp. GW460-11-11-14-LB5

 Score =  364 bits (934), Expect = e-104
 Identities = 216/692 (31%), Positives = 362/692 (52%), Gaps = 25/692 (3%)

Query: 40  IAEALKIHDEERLEALRRRLRAMERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFF 99
           ++  L ++D+E  E +   L+  +  G  +      + L E  + + GTV    DG  + 
Sbjct: 34  VSAKLNLNDQESRETILEILKEGKSAGIFLEPEKGKFKLKELQNFIIGTVDMTADGSAYI 93

Query: 100 RPDNGGD-DLFINERDMQLYFHGDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYV 158
            P++  + D+F+  R ++   HGD V A         + D  +V ++    +   G   +
Sbjct: 94  VPEDEFEKDIFVAPRKLKNALHGDTVKAYVFAKKSGRKNDGEVVEIIKRAKSDFTGVIKI 153

Query: 159 DAGMAFVVADDKRIPHEILIANEDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQM 218
               AFV+ADDK++ H+I +   D + A++G  V++ L+  P       G V  VLG Q 
Sbjct: 154 SDRFAFVIADDKKMMHDIFVPLADTHEAKNGQRVLVTLSDWPESAKNPIGIVKHVLGNQG 213

Query: 219 APGMEIEIALRNYDLPHQWSAVIEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARD 278
               E+   L  Y  P ++   +E++   IP+ +   +   R D R +   TID  DA+D
Sbjct: 214 ENNTEMNAILAQYGFPLEFPPQVEREANAIPEEIPAAEIAKRKDFRNVLTFTIDPADAKD 273

Query: 279 FDDAVYAERKRGGGWRLWVAIADVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLS 338
           FDDA+  ++   G   + V IADVSHYV   + LDKEA +R  SVY   +VIPMLPE+LS
Sbjct: 274 FDDAISYQKLPNGNHEIGVHIADVSHYVIQGTELDKEAYSRATSVYLVDRVIPMLPERLS 333

Query: 339 NGLCSLNPGVDRLCMVAEMTISAKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKDE 398
           NG+CSL P  D+LC  A   +  +  +    +   V+HS  RF+Y +   ++E  E  D 
Sbjct: 334 NGVCSLRPHEDKLCFAAVFELDEQANIQSEWYGRTVIHSDRRFSYEEAQEVIENKE-GDY 392

Query: 399 HKALFPHLKVLQELYLCLDEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKII 458
            K +      L EL   L +++ + GAI+FE+ E +F  +E  K   +  + R  AHK+I
Sbjct: 393 AKEILK----LNELAYILRDRKFKNGAISFESTEVKFKLDEAGKPIGVYVKERKDAHKLI 448

Query: 459 EECMILANVAAAKFVI-----KHKGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEP 513
           E+ M+LAN   A+F+      K K   +YRVH+ P+ + L  F  F +  G  +    + 
Sbjct: 449 EDYMLLANRKVAEFIAKKTKGKDKLTFVYRVHDSPNMETLNTFATFASRFGYKINTKSDK 508

Query: 514 EPADYL-ALMAQLAGRPDAELIQVMLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRY 572
           E A  L  LM  + G+ +  ++  + +RSM +A+Y+     H+GLA E Y+HFTSPIRRY
Sbjct: 509 EIAKSLNNLMNDVEGKKEQNILTSLAIRSMAKAIYSTKKTSHYGLAFEYYTHFTSPIRRY 568

Query: 573 PDLVLHRVIRYLLAKERGEASEKWTADGGYHYQLEELDLLGEECSNTERRADEATRDVSD 632
           PD++ HR+++  L             DGG    +E  ++     S  E+RA +A R    
Sbjct: 569 PDVMAHRLLQTYL-------------DGGKSADMEFYEVACVHSSAMEKRAADAERASIK 615

Query: 633 WLKCEFMQDHVGDSFSGVIASVTSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLI 692
           + + E++++++G ++ G+I+ VT +G++V ++E   +G++ +  +  D++  D +   ++
Sbjct: 616 YKQAEYLENNIGTAYKGIISGVTEWGMYVEIEENKCEGMIRLRDISDDFYVLDEKNYCIV 675

Query: 693 GENSGQIYQIGDPVAVKVASVNLDDRQIDLQM 724
           G+   + YQ+GD V ++V  V+L  RQID  +
Sbjct: 676 GQRKKKKYQLGDEVMIRVKKVDLSKRQIDFTL 707