Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 1037 a.a., ribonuclease R (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  422 bits (1084), Expect = e-122
 Identities = 295/818 (36%), Positives = 427/818 (52%), Gaps = 44/818 (5%)

Query: 8   EREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAMERDGE 67
           ++ +E Y   +P    +    R    P   D++   L +H   + E L  RL  + R G 
Sbjct: 4   KKREESY--VLPDANDLATLFREAHRPLKIDALMRMLGLHRRMKKE-LEDRLDDLVRQGR 60

Query: 68  LVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGG-DDLFINERDMQLYFHGDKVLA 126
           ++  RG  +GL E++ L++GT+   + G GF  P+  G DD++++   M   +HGDKV+ 
Sbjct: 61  IIRLRGGAWGLVEQLRLVTGTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVV 120

Query: 127 QKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVV---ADDKRIPHEILIANEDK 183
                      + RIVR+L      +  R     G   ++   AD +     ++  +  +
Sbjct: 121 ALLPGRHGKNPEGRIVRVLERGRKEIPARVVRRMGRHSLLCRPADPRMAVSFVVDMSAVE 180

Query: 184 NGARHGDVVVIELTRRPGRYVRAG---GKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV 240
             A  GD+VV      PG  V  G        VLG      ++  +   N+D+P  +   
Sbjct: 181 EKAEKGDLVVAA----PGEKVEDGLWAATGLAVLGADDNVLVQERLVKINHDVPGDFPPE 236

Query: 241 IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIA 300
           + ++ R +P     +D EGR+DLR L  VTIDG  ARDFDDAVY E ++G G+RLWVAIA
Sbjct: 237 VLEEARDLPAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVE-EQGTGYRLWVAIA 295

Query: 301 DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS 360
           DV+HYVR  SA+D+EA+AR NS YFP  V PMLPE LSNGLCSLNP V RL MVAE    
Sbjct: 296 DVAHYVRPGSAMDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFY 355

Query: 361 AKGGLSGYKFYPAVMHSHARFTYTQV-AAMLEGGEVKDEHKALFPHLKVLQE---LYLCL 416
           A G     KFY A++ S AR TY QV  A++E  E   E + L P L +L+    L   L
Sbjct: 356 ADGTPGRSKFYAAIIESKARLTYGQVNRAIIEKDE--KERRLLTPVLPLLERAEALARLL 413

Query: 417 DEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKH 476
           + +R+ERG++ F+  E + IFN   +   I  + R+  H+IIEE MI AN A A+F+ + 
Sbjct: 414 NAKRSERGSLDFDLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEK 473

Query: 477 KGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLAL--MAQLAGRPDAE-L 533
               LYRVH +P  +KL      L    L+      P  A   AL  + Q A   D E L
Sbjct: 474 NARFLYRVHPEPDTEKLEGLFKVLGRTSLAQH---LPGKASAKALQGVLQAAKGSDQEFL 530

Query: 534 IQVMLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEAS 593
           +  M LR+M QA Y PD+EGHFGLA E Y HFTSPIRRY DLV+HR +R  L        
Sbjct: 531 VNRMALRTMMQARYAPDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLG------- 583

Query: 594 EKWTADGGYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIAS 653
                  G       L  + +  +  ER A EA R++   +   F+ + VG+ F+GVI+ 
Sbjct: 584 ---LPVNGPLPGERALLTIADTLNTNERVAMEAEREILKRITVLFLSERVGEEFTGVISG 640

Query: 654 VTSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASV 713
           +  FG FV  +E+  +G+V +SSL  DY+ Y P+RQ L+GE +G+ +++G  V V++A V
Sbjct: 641 IIDFGFFVEFNEVMAEGMVRLSSLDDDYYGYLPERQELVGERTGRSFRLGQTVTVRLAEV 700

Query: 714 NLDDRQIDLQMEG-ERPGRKKAGKKPTTARDRANLEG--ARTGNG-KPGKGGSVRSQLAG 769
           N+   +++L + G +        K+    RD     G  AR G G +PG+    RS    
Sbjct: 701 NVARLEVNLALAGPDAVASTGVRKERRERRDYGGRSGRDARGGRGARPGERSGERSGRPE 760

Query: 770 GKLGGSETKKRDAKAKDGKKPKKAAEAKPKAAKRVKRK 807
           G+   +  ++ D+ A     P  A     +AA++ + +
Sbjct: 761 GRDARTGIRQADSVA---AAPAGAGAIDDRAARKARAR 795