Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 661 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  283 bits (723), Expect = 3e-80
 Identities = 190/641 (29%), Positives = 312/641 (48%), Gaps = 23/641 (3%)

Query: 87  GTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFHGDKVLAQKAGVDRRGRRDARIVRLLS 146
           GTV      FGF   D G D +F+   +MQ    GD+V   +  V++ G+    +  LL 
Sbjct: 26  GTVKATNGRFGFVALDEGRD-VFLPPEEMQKVLPGDRVNVTEQEVEK-GKTQGVVDELLE 83

Query: 147 ERSAALVGRFYVDAGMAFVVADDKRIPHEILIANEDKNGARHGDVVVIELTRRPGRYVRA 206
            R    VGR+ V     FVV +   I   I I  +++  A+  D +  ++ + P +  + 
Sbjct: 84  TRLNTFVGRYLVKGKGHFVVPETPGINRWIFIPPKERMNAQQDDYIYCQIHKHPIKDGKG 143

Query: 207 GGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAVIEKKLRRIPDYVTDEDKEGRVDLREL 266
             KV  V+GK   PG+E    L  +DL   W   +  +   + +   +  + GR D  + 
Sbjct: 144 QAKVLRVIGKAGEPGIERSFTLATFDLADTWPDAVRAQADSLGEGDIESRETGREDRTDR 203

Query: 267 PLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIADVSHYVRTDSALDKEARARGNSVYFP 326
           P VTID    +D DDA+ AE     GW L +AIAD +  + TDS  ++EA  R  ++YFP
Sbjct: 204 PYVTIDSPGTQDMDDALLAE-PNATGWTLSIAIADPTAVIDTDSPAEQEAFNRATAIYFP 262

Query: 327 SQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTISAKGGLSGYKFYPAVMHSHARFTYTQV 386
            + +PMLP+ +S  LCSL P   RL +V ++ ++  G L  Y F+ AV+ S  + +Y  V
Sbjct: 263 GEPLPMLPDSISTRLCSLMPEAKRLSLVCDLQVNNDGSLGDYSFHQAVIQSKGKLSYELV 322

Query: 387 AAMLEGGE---VKDEHKALFPHLKVLQELYLCLDEQRAERGAIAFETLETQFIFNEQRKI 443
           + ++EG E   +K   +A+   L  L +    L + R E   ++ +  E +   +E ++I
Sbjct: 323 SNLIEGREDDDIKALPEAVANSLDQLHQAATALRKWRNEHALLSGDRPEFRLRLDENKRI 382

Query: 444 DRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHVLYRVHEKPSEQKLTQFKDFLAER 503
             I P  +N+AH+++EECM+ AN  AA F+  H    L+  H    + +    +  +   
Sbjct: 383 RLIEPSIQNEAHRLVEECMVAANRCAADFLSNHTAG-LFIQHPGLRDDRADNIRSLIDSH 441

Query: 504 GLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLRSMRQAVYTPDNEGHFGLALEAYS 563
              ++G    +   +  LM +         ++ +L R + +A  +     H G+ L+AY+
Sbjct: 442 APHLSGVDAHQAEGFRKLMKETDSLEAEVPVKAILSRQLARAELSFKPAPHQGMGLDAYT 501

Query: 564 HFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTADGGYHYQLEELDLLGEECSNTERRA 623
            FTSP+R++ D  +HR+I+  L     +A    T D     QLE L          + RA
Sbjct: 502 TFTSPLRKFSDFYVHRLIKAALWDTPMKA---LTED-----QLEALQA-------AQIRA 546

Query: 624 DEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGLFVRLDELFIDGLVHISSLGSDYFQ 683
            +A   +  WLK +F +    +  +GVI+     G FVRLD   ++G V    L   Y  
Sbjct: 547 RQAANSLESWLKSDFAKTLGEEPMAGVISRTVPAGFFVRLDANGLEGFVSCKDLDGKY-S 605

Query: 684 YDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQIDLQM 724
           +DP   RLI   +G+I+Q+  PV V  + V+ + RQI+ ++
Sbjct: 606 FDPVTMRLIHNKNGRIFQLEQPVTVSFSGVDDERRQINFKL 646