Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 833 a.a., ribonuclease R from Burkholderia phytofirmans PsJN

 Score =  694 bits (1791), Expect = 0.0
 Identities = 392/828 (47%), Positives = 517/828 (62%), Gaps = 31/828 (3%)

Query: 8   EREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAMERDGE 67
           ++   K+  PIPSRE IL  LR+  +P   + IAEAL I  +ER E   +RL AMERDG+
Sbjct: 8   DKPLSKFPYPIPSREEILGVLRTSEAPLAANDIAEALSIKRQER-EGFFKRLGAMERDGQ 66

Query: 68  LVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFHGDKVLAQ 127
           +   +   Y L    + ++G V GH+DG+GF   D+G DDLF+   +MQ   H D+VLA+
Sbjct: 67  IRLDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTAEMQKVMHNDRVLAR 126

Query: 128 KAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIANEDKNGAR 187
             G DRRGR +  IV +    +  ++GR   + G   V  +DKRI H+ILI    K  A+
Sbjct: 127 IVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILIQQNTKK-AK 185

Query: 188 HGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAVIEKKLRR 247
            G VVV+ELT  P R+ +  G+V EVLG    PGMEIEIA+R Y +PH++S     +  R
Sbjct: 186 VGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQAALDEASR 245

Query: 248 IPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERK---RGGGWRLWVAIADVSH 304
           +PD V   D   R+DLR++PLVTIDGEDARDFDDAVY E     RG G+RL VAIADVSH
Sbjct: 246 LPDEVRPVDARHRIDLRDVPLVTIDGEDARDFDDAVYCEPVQVGRGEGFRLIVAIADVSH 305

Query: 305 YVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTISAKGG 364
           YV   S LD +A  R  SVYFP +VIPMLPEKLSNGLCSLNP VDR  +V +M I+A+G 
Sbjct: 306 YVHPKSGLDADAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPHVDRCVLVCDMIITARGE 365

Query: 365 LSGYKFYPAVMHSHARFTYTQVAAMLEG--GEVKDEHKALFPHLKVLQELYLCLDEQRAE 422
           +  Y+FYP VMHS AR TYT+VAA+L+   G       AL P L+ L  +Y  L   R +
Sbjct: 366 VKAYQFYPGVMHSAARLTYTEVAAVLKNTKGPEATRRAALLPQLQNLYGVYKSLFAARQK 425

Query: 423 RGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHVLY 482
           RGAI F+T ET  + N Q KI++I+PR RN AHK+IEECM+ ANV AA F+ ++K   L+
Sbjct: 426 RGAIDFDTTETYIVCNAQGKIEQIIPRTRNDAHKLIEECMLAANVCAADFLKRNKHPGLF 485

Query: 483 RVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLRSM 542
           RVH  P+ +KL   + FL   GL++ GG +P  +DY ALMAQ+  RPDA+++Q MLLRSM
Sbjct: 486 RVHAGPTAEKLENLRTFLRGMGLTLAGGDKPHASDYAALMAQIRERPDAQMLQTMLLRSM 545

Query: 543 RQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLL-----AKERGEASEKWT 597
           +QAVY+PDN GHFGLA EAY+HFTSPIRRYPDL+ HR I  +L       E  +  E  T
Sbjct: 546 QQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPEPPQGVELNT 605

Query: 598 ADGGYHYQLEELD----------------LLGEECSNTERRADEATRDVSDWLKCEFMQD 641
           A       +++ D                 LG  CS  ERRADEA+RDV  WLKC FM+D
Sbjct: 606 ALSPRARAMQQADDEKRGRVRGNNVAIWEELGLHCSANERRADEASRDVEAWLKCYFMRD 665

Query: 642 HVGDSFSGVIASVTSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQ 701
            +G+ + G++  VTSFG+FV+LD LFI+GLVH++ LGSDYFQYD  +  L GE +G  Y+
Sbjct: 666 KLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYR 725

Query: 702 IGDPVAVKVASVNLDDRQIDLQMEGERPGRKKAGKKPTTARDRANLEGARTGNGKPGKGG 761
           + D V V+V+ V+LD R+ID ++  + P +    + P+  +      GAR     P +GG
Sbjct: 726 LSDRVRVQVSRVDLDARKIDFRLVRDTPIKPPLVRGPSADKSSGENGGARVRALPPAEGG 785

Query: 762 SVRSQLAGGKLGGSETKK-RDAKAKDG--KKPKKAAEAKPKAAKRVKR 806
           +        K   ++T   ++A+A  G  KK   A ++ PK   R KR
Sbjct: 786 APAPGARRKKAAPAQTAAVKEARAARGAAKKHGAATKSAPKPQARKKR 833