Pairwise Alignments

Query, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

Subject, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

 Score = 1308 bits (3385), Expect = 0.0
 Identities = 655/816 (80%), Positives = 726/816 (88%), Gaps = 15/816 (1%)

Query: 1   MINDPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLR 60
           MI DPHFEREQ+KY+NPIPSRE+I+EYLRSQ SP  RDSIA AL+IHDEE+LEALRRRLR
Sbjct: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLR 60

Query: 61  AMERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFH 120
           AMERDGELVFTRGQ YGLPE+MDL+SGTVLGH++G+GFF+PD GGDDLFI+ RDM +YFH
Sbjct: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH 120

Query: 121 GDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN 180
           GDKVLAQKAG+DR+GRR+ARIVRL+  RSAA+VGRF+VD+GMAFV+ADDKRI  EILIA 
Sbjct: 121 GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAT 180

Query: 181 EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV 240
           ED+NGAR GDVVV+ELTRRPGR+V+A GKVTEVLGKQMAPGMEIEIALRNYDLPH WSAV
Sbjct: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAV 240

Query: 241 IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIA 300
           IEKKLRRIPD VT+ DK GRVDLR+LPLVTIDGEDARDFDDAVYAE K  GGWRLWVAIA
Sbjct: 241 IEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA 300

Query: 301 DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS 360
           DVS+YVRTDSALD EARARGNSVYFPSQVIPMLPEK+SNGLCSLNP VDRLCMVAEMTIS
Sbjct: 301 DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS 360

Query: 361 AKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKDEHKALFPHLKVLQELYLCLDEQR 420
           A+G LSGYKFYPAVMHSHARFTYTQVAAMLEGG +  EH+ALFPHL+ LQ LYL LDEQR
Sbjct: 361 ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR 420

Query: 421 AERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHV 480
           AERGAIAFETLETQFIFN+QRKID+IVPRARNQAHKIIEECMILANV+AAKFV KHKG +
Sbjct: 421 AERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI 480

Query: 481 LYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLR 540
           LYRVHE PSEQKL  FK+FLAERGLSM GGLEP PADY  +M Q+A RPDAELIQVMLLR
Sbjct: 481 LYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLR 540

Query: 541 SMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTADG 600
           SMRQA+YTPDNEGHFGLALE Y+HFTSPIRRYPDLVLHRVIRYLLAKE+GEA+EKWT+DG
Sbjct: 541 SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTSDG 600

Query: 601 GYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGLF 660
           GYHYQL+ELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGD+F  VIASVT+FGLF
Sbjct: 601 GYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF 660

Query: 661 VRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQI 720
           VRL++LFIDGLVHISSLGSDY+Q+DP RQRLIGE++GQIYQ+GDPV VKVA+VNLDDRQI
Sbjct: 661 VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNLDDRQI 720

Query: 721 DLQMEGE--RPGRKKAG---KKPTTARDRANLEGARTGNGKPGKGGSVRSQLAGGKLGGS 775
           DL M G+  + GR+K+    +KP TAR+R N EGA+    K  K    +S+    K G S
Sbjct: 721 DLVMLGDSGKGGRRKSAPSREKPMTARERVNREGAKM--AKAAKSTGAKSKAGSDKAGAS 778

Query: 776 ETKKRDAKAKDGKKPKKAAE---AKPKAAKRVKRKK 808
           +     +K+K G KPKK+ +    KPKAAKR  RKK
Sbjct: 779 K-----SKSKAGAKPKKSVKNSAKKPKAAKRSTRKK 809