Pairwise Alignments

Query, 326 a.a., tRNA-dihydrouridine synthase A (RefSeq) from Shewanella amazonensis SB2B

Subject, 335 a.a., TIM-barrel protein, yjbN family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  526 bits (1356), Expect = e-154
 Identities = 253/318 (79%), Positives = 282/318 (88%)

Query: 5   LNRTFSVAPMLDWTDRHYRYFARLMSKEALLYTEMVTTGAILHGKGDYLAYNQEEHPLAL 64
           L+RTFS+APMLDWTDRHYRYFARLMS  ALLYTEMVTTGAILHG+GDYL YNQEEHPLAL
Sbjct: 12  LDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLAL 71

Query: 65  QLGGSDPKDLATCAKLAEARGYDEVNINVGCPSDRVQNGRFGACLMAEPKLVAECVDAMR 124
           QLGGS+P +LA CAKLA  RGYDEVN+NVGCPSDRVQNGRFGACLMAEP+LVAECVDAM+
Sbjct: 72  QLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMK 131

Query: 125 QQVSVPVTVKTRIGIDEQDSYGFLTDFVETVSAAGCDTFIIHARKAWLQGLSPKENREIP 184
           Q V +PVTVKTRIGIDEQDSY FLT F++TV A GC  FIIHARKAWLQGLSPKENREIP
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIP 191

Query: 185 PLDYERVYQLKRDYPQLSISINGGVTSIEQAKTHLAQLDGVMVGREAYQNPYILASVDTE 244
           PLDY+RVYQLKRDYP L+ISINGG+TS+EQA+THL  LDGVMVGREAYQNPY+LA VD  
Sbjct: 192 PLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQV 251

Query: 245 LCGKPAVVSSREEVIGKLLPYIGKHLADGGRLNHISRHIIGLYQGLPGSRAWRRHLSENA 304
           LCG    V SRE VI  +LPYI  HL  GGRLNHI+RH+IGL+QGLPG+RAWRR+LSENA
Sbjct: 252 LCGSTKAVMSREAVIEAMLPYIEAHLQVGGRLNHITRHMIGLFQGLPGARAWRRYLSENA 311

Query: 305 HKPGAGIEVIENAIKAME 322
           HK GAGIEV++ A ++++
Sbjct: 312 HKNGAGIEVVKLAYQSVQ 329