Pairwise Alignments
Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS
Score = 348 bits (892), Expect = 2e-99
Identities = 242/673 (35%), Positives = 344/673 (51%), Gaps = 38/673 (5%)
Query: 891 RMETELAQSEAHFRAL----FDNAGIGIVNLD-----DRGIIKDCNGQFVSDLGISSDSL 941
R E+ L +++ A+ D + IGI LD DR ++ N Q + G S +
Sbjct: 201 RAESALLRAKEEVEAIQQTTLDASAIGIAYLDTSNHEDRHVVL-ANRQMAAMFGYGSQEV 259
Query: 942 KRKQLADLMHPEDRALATGLYQALAESEQGSISG-EWRMLDGDGELMWMAVIASVLEEGD 1000
+ A+ ++P + + + EQG + E M +GE W AV + D
Sbjct: 260 IGLR-AEELYPSRESFVSATQDIMPILEQGQVMRQELIMRRRNGECFWCAVSGKAINPDD 318
Query: 1001 GGERSVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQ 1060
R VV + ++T K EL A+E A+AAN+AKS+FLANMSHEIRTP I+G+
Sbjct: 319 LS-RGVVWTFEDVTERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLD 377
Query: 1061 LCLQTELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLG 1120
L L T L+ KQ Y+ ++K LL I+NDILD SKIEAGKL I L +L +L
Sbjct: 378 LLLHTPLNEKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELT 437
Query: 1121 DMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISEL 1180
++ + AA K LE + + +P + GDP+RL Q++ NL+NNAIKFT G V L I
Sbjct: 438 EVQAAAAAQKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECT 497
Query: 1181 ARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1240
+ L+ VRDSGIG+ E Q +F F+QAD+STTR +GGTGLGL ICKQLVELM
Sbjct: 498 RIAPGRQHLRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELM 557
Query: 1241 GGEIGVDSQFGNGSTFYF---------TVSVKVAQNAQLNVEQELEGMAVLVVDDNSTAR 1291
G IGV S G GS F+F TVS A + +L+VDD R
Sbjct: 558 HGSIGVSSNSGEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANR 617
Query: 1292 DILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTETAARMR----EL 1347
++L L V A +G+EA+ L+D +M MDG E ++R +
Sbjct: 618 EVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQR 677
Query: 1348 KQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQ 1407
++ P+I + + + +K G++ Y+ KP+ A L+ I G R+
Sbjct: 678 RRTPIIALTAFVMRGD-REKCLAAGMDDYLPKPVDAQTLIATI-------GKWLEGRETN 729
Query: 1408 PMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLV 1467
P + SG RILLV+DN +E ++ LE +G + A +G+ AL+ + FDLV
Sbjct: 730 PARTPRFSG----RILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLV 785
Query: 1468 LMDCQMPVMDGYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVG 1527
LMDC+MP +DG TR R ++A+TA + C AGMND +AKP
Sbjct: 786 LMDCRMPGLDGCATTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQ 845
Query: 1528 ILYQTLLQYLCPE 1540
L L ++L P+
Sbjct: 846 ELVTLLRRWLAPQ 858
Score = 34.7 bits (78), Expect = 5e-05
Identities = 81/379 (21%), Positives = 137/379 (36%), Gaps = 60/379 (15%)
Query: 712 LAEQHAFEVEYRIRHRDGSLRWVHEKGKASYDED--GNPVWFDGSLNDITESKLAQERIE 769
L + E +R R+G W GKA +D VW + D+TE K A+ +
Sbjct: 285 LEQGQVMRQELIMRRRNGECFWCAVSGKAINPDDLSRGVVW---TFEDVTERKAAESELR 341
Query: 770 QSREQLETITES-------------VPST----VYQLVWR---SERDRRFTFLSSAAMAT 809
+RE+ E + P T V L+ +E+ R+ L+ +
Sbjct: 342 HAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLNEKQERYIRLAYGSTKQ 401
Query: 810 LGFHRNEVLDNFELVAERIV----EED----RGEIIQMLAGRHGMQWTKAFRYHFPSGEL 861
L N++LD ++ A ++V E D GE+ ++ A + + FRYH
Sbjct: 402 LLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQKGLE-FRYHIKGIIP 460
Query: 862 RWLEAGARGSKQQDA-LVWNGYLMDISGRKRME---TELAQSEAHFRALFDNAGIGI-VN 916
+ +Q A L+ N SG ++ T +A H R ++GIG+
Sbjct: 461 PKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRVEVRDSGIGVPPE 520
Query: 917 LDDRGIIKDCNGQFVSDLGISSDSLKRKQLADLMHPEDRALATGLYQALAESEQGSISGE 976
L + + D +DS + L + + L E GSI
Sbjct: 521 LQET----------IFDKFTQADSSTTRLFG------GTGLGLTICKQLVELMHGSIGVS 564
Query: 977 WRMLDGDGELMWMAVIASVLEEGDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQA 1036
G+G W + L E D V + A L D + +D +A +
Sbjct: 565 SN--SGEGSCFWFDI---ELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREV 619
Query: 1037 KSDFLANMSHEIRTPMNAI 1055
+++LA ++R N +
Sbjct: 620 LAEYLAQAHCQVRQAANGL 638