Pairwise Alignments

Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  558 bits (1437), Expect = e-162
 Identities = 336/768 (43%), Positives = 460/768 (59%), Gaps = 30/768 (3%)

Query: 904  RALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADLMHPEDRA-LATGLY 962
            +A+FD A IGI+   DR II+ CN      LG     +  +Q   + +P++   LA G  
Sbjct: 405  QAVFDAARIGIILTRDR-IIRRCNRTIEEILGYEPGEIL-EQSTRIWYPDEATFLAVGER 462

Query: 963  QALAESEQGSISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMSIANITRLKLLSDE 1022
                 +  G    E  ++  DG   W  ++A V++  +  E+ +  ++ +I   + +  E
Sbjct: 463  VREGLTRHGYFREELELVRKDGSRFWGRIMAQVIDR-NAPEKGMAGTVEDIGEERRILAE 521

Query: 1023 LMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERAS 1082
            +  AK  A+AA QAK+DFLANMSHEIRTPMNA+IGM+ L L+T+LD +QR Y+ KI+ +S
Sbjct: 522  MAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQHSS 581

Query: 1083 KSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGV 1142
            + LLGIINDILDFSK EAGKL IE + F L+ +LED+  + S +A  K LE +  +A  V
Sbjct: 582  QHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMADEV 641

Query: 1143 PTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTA 1202
            P HL GDPLR+ QVLIN  +NA+KFTERGEV + +        +V L+FAV D+GIG+ A
Sbjct: 642  PRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIGIKA 701

Query: 1203 EQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVSV 1262
             +   LF SF QAD+STTRKYGGTGLGL I K+L ELMGG++G +S+ G GSTF+FT  +
Sbjct: 702  GELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTARL 761

Query: 1263 KVAQNAQLNV--EQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEK--- 1317
              + NA+       +L    +LVVDD+  ARD++   L+SM F V    SG   L +   
Sbjct: 762  GRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQR 821

Query: 1318 --CAERDYRIALIDWKMPEMDGTETAARMR--ELKQPPLILMVSAHANSEFIDKVEEMGI 1373
               A   Y I  +DW+MPEMDG  TA  +R  EL QPPL+LM++A+   E      E G+
Sbjct: 822  ASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGL 881

Query: 1374 NG---YITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEM 1430
             G    + KP+S S+L + +M  L  +        A P     L+ L G R+LLVEDN++
Sbjct: 882  QGIEEILIKPVSPSQLFNTVMRILDHEDGP--HSAADPEALPDLAPLAGLRVLLVEDNQL 939

Query: 1431 NQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGYQATRELRKLPG 1490
            NQEVASEFL    +V+ +AD+G  ALEK+ QQ +D++LMD QMPVMDG  ATRE+R+   
Sbjct: 940  NQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATREIRRQFP 999

Query: 1491 LAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYLCPEAKGLESADAD 1550
             A LP++AMTANAM  D+E CL AGMNDHIAKP++   L   LL++L P A  L +  A 
Sbjct: 1000 AAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWLAPGAP-LVAPQAA 1058

Query: 1551 AAADQEVTSL--TSWPEHED---------LDIDRGLQLVQNSERLYRRILERFVTSQAQA 1599
            A     VT     + P   D         LD   GL    + E LY R++++FV+ Q  A
Sbjct: 1059 APLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLYLRLMDKFVSGQRDA 1118

Query: 1600 GKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQ 1647
             +++ +A+  G    A R AHTLKGV+  + A  L + A  LE  + Q
Sbjct: 1119 PQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLEHAIRQ 1166