Pairwise Alignments
Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Subject, 1430 a.a., PAS domain S-box from Dechlorosoma suillum PS
Score = 510 bits (1313), Expect = e-148
Identities = 371/1080 (34%), Positives = 565/1080 (52%), Gaps = 54/1080 (5%)
Query: 711 ALAEQHAFE-VEYRIRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIE 769
A+A HA E+ + DG V YD DG + G DIT +QE +
Sbjct: 349 AMALGHASRNEEWLVFAADGHRELVETIKTPIYDRDGVVLGVLGVARDITPLHQSQETLR 408
Query: 770 QSREQLETITESVPSTVYQL-VWRSERDRRFTFLSSAAMATLGFHRNEVLDNFELVAERI 828
QS L+ TV ++ W+ + S A LG + + E +A+ +
Sbjct: 409 QSEAALKRT-----QTVARIGSWKIDIPANLLHWSEEAHHLLGVPWDHGVGFDEFLAQ-V 462
Query: 829 VEEDRGEIIQM-LAGRHGMQWTKAFRYHFPSGELRWLEAGARGSKQQDA--LVWNGYLMD 885
+DR + LA G ++ R G ++W+ A + L G + D
Sbjct: 463 HGDDRAWVRSAWLAALEGAEFDIEHRM-VVDGTVKWVRQRAELEFDEAGKPLRGIGMVQD 521
Query: 886 ISGRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGI-IKDCNGQFVSDLGISSDSLKRK 944
I+ K L Q E FR++ + A IGIV +D + + N LG + + +
Sbjct: 522 ITAIKDASETLKQREKIFRSITNQAAIGIVLIDAETMTFAEFNDAACECLGYTREEFAKL 581
Query: 945 QLADLMHPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAV----------IAS 994
+ D+ DRA + + + + R DG W+ V ++S
Sbjct: 582 SVYDIQGVHDRAGVDARRAQILAQREAAFENQRRHKDGSLRDFWVTVKVLRLNGRDYLSS 641
Query: 995 V---LEEGDGGERSVVMSIANITRLKLL-SDELMAAKEDADAANQAKSDFLANMSHEIRT 1050
V + E ER+++ + L + EL AAKE A+AAN++KS FLANMSHEIRT
Sbjct: 642 VWTDITEAKENERALLRYQNQLEELVAARTAELAAAKEAAEAANRSKSSFLANMSHEIRT 701
Query: 1051 PMNAIIGMSQLCLQTELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPF 1110
PMNAIIG++ L + +QR ++K+ A+ LLGIINDILDFSKIEAGK+ +E F
Sbjct: 702 PMNAIIGLTHLIRRDIATERQRQQLDKVSNAAHHLLGIINDILDFSKIEAGKMSLEPTDF 761
Query: 1111 QLDTILEDLGDMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTER 1170
++D ++ ++ + + KA K LE++ +A +P L GD LRL QVL+N + NA+KFTER
Sbjct: 762 EVDRVIHNVCTLVAEKAEAKGLEVVVDIAR-LPPALHGDGLRLGQVLLNFVGNAVKFTER 820
Query: 1171 GEVMLSISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGL 1230
G V++ ++ D + ++ V D+GIGL+ EQQ LF++F+QAD STTR+YGGTGLGL
Sbjct: 821 GSVVVRGYVARQEADSLWVRLEVADTGIGLSREQQQCLFQAFTQADVSTTRQYGGTGLGL 880
Query: 1231 AICKQLVELMGGEIGVDSQFGNGSTFYFTVSV-KVAQNAQLNVEQEL-EGMAVLVVDDNS 1288
AI ++L E+MGG +GVDS+ G GSTF+ VA + L + L + L VDD+
Sbjct: 881 AISRRLAEMMGGRVGVDSESGKGSTFWIEAPFGSVAAHDHLELPPCLPRNLRALAVDDSE 940
Query: 1289 TARDILRTTLQSMGFSVDSARSGMEALEKCAERD-----YRIALIDWKMPEMDGTETAAR 1343
AR+ L TL ++G VD+A SG AL+ D Y++ L+DW MP DG ET
Sbjct: 941 DARESLAHTLAALGTRVDTAASGEAALDAVLAADRLGDPYQLVLLDWLMPPPDGLETGRC 1000
Query: 1344 MREL--KQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKP 1401
+R L P L+VSA A + E G +I KP++ + +L + A G P
Sbjct: 1001 IRTLPLNVQPQQLLVSA-AKDIPATALSEAGFAAFIAKPVTPASVLVALEGAFGDT--PP 1057
Query: 1402 VRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQ 1461
+ R + L+ + +RILL EDN +NQEVA E L VG+ + +A+NG+ ALE
Sbjct: 1058 LSRSPGDEMERSLARYRNQRILLAEDNPLNQEVALELLRHVGLAVDLAENGKEALELARG 1117
Query: 1462 QSFDLVLMDCQMPVMDGYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIA 1521
+++ L+LMD QMPVMDG +A+R++R LPG A P++AMTANA + D+++C+ AGMNDH+A
Sbjct: 1118 KAYALILMDIQMPVMDGLEASRQIRALPGYAGTPILAMTANAFSEDRDLCIAAGMNDHVA 1177
Query: 1522 KPIEVGILYQTLLQYLCPEAKG------LESADADAA-ADQEVTSLTSWPEHEDLDIDRG 1574
KP++ LY TLL++L + L +A+A AA AD +L + P L++ +
Sbjct: 1178 KPVDPDQLYGTLLRWLPEPGRDVVVRPPLPAAEAPAATADALAAALEAVP---GLELAQA 1234
Query: 1575 LQLVQNSERLYRRILERFVTSQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTL 1634
L++V+ + + L +F G++I L G+ +A R+ HTLKG+AG+L +
Sbjct: 1235 LRVVRGNRTRLAQFLRKFSVDHGGDGRRIEACLGFGETAEAARVVHTLKGLAGSLGLAAI 1294
Query: 1635 VEEARQLEAKLAQGEACEAELEAVETRLVTIVAAIERWMTEGVEEQGVESGEP-LSADAL 1693
LE L +G +AE++A RL +A + G+ E VE+ P + L
Sbjct: 1295 QAHTLALEEAL-RGSLPQAEVDARLARLEGALAEFNAALA-GL-EGAVEAAAPGIDWAQL 1351
Query: 1694 KEVLNTLVTQLEDADADAVSTLESLSGQVVAGIWARLKPVSQMVAGYQFDDGADLVRELI 1753
+ L QL D DA T +SL + A + A ++ ++ + + ++ ++ LI
Sbjct: 1352 GREVEVLQRQLAVDDLDASRTFQSLRPTLEAALGAEVRTLAAQIDDFNLEEALHTLQALI 1411
Score = 53.1 bits (126), Expect = 2e-10
Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 48/319 (15%)
Query: 516 AVLEAAPEAMLIVDESGQLVFSNSRCQELFGYSGEEM--------LNLNIDALIPENERH 567
++++ P+ + + D +G + NSR + LFG+ E+ + + +N+R
Sbjct: 289 SLIQGMPDLVWLKDPAGIYLACNSRFESLFGHREAEIVGRTDYDFVGRELADFFRDNDRR 348
Query: 568 ----GHQGKRQLFI----EGGRDKVMANGKPLHALKCGGEQFPVQIGLSLLPADSRGQRQ 619
GH + + ++ +G R+ V P++ ++ V +G
Sbjct: 349 AMALGHASRNEEWLVFAADGHRELVETIKTPIY------DRDGVVLG------------- 389
Query: 620 VAASIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNITELTGY 679
V RD+T + +R+SE+ + + + +I+ + + S+ L G
Sbjct: 390 VLGVARDITPLHQSQETLRQSEAALKR--TQTVARIGSWKIDIPANLLHWSEEAHHLLGV 447
Query: 680 PAWHFIESKKRSFGSLILDEDAERCDAIISGALA--EQHAFEVEYRIRHRDGSLRWVHEK 737
P H + F + + + S LA E F++E+R+ DG+++WV ++
Sbjct: 448 PWDHGV-----GFDEFLAQVHGDDRAWVRSAWLAALEGAEFDIEHRM-VVDGTVKWVRQR 501
Query: 738 GKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVYQLVWRSERDR 797
+ +DE G P+ G + DIT K A E ++Q + +IT +V
Sbjct: 502 AELEFDEAGKPLRGIGMVQDITAIKDASETLKQREKIFRSITN---QAAIGIVLIDAETM 558
Query: 798 RFTFLSSAAMATLGFHRNE 816
F + AA LG+ R E
Sbjct: 559 TFAEFNDAACECLGYTREE 577
Score = 40.4 bits (93), Expect = 2e-06
Identities = 104/487 (21%), Positives = 190/487 (39%), Gaps = 41/487 (8%)
Query: 312 LSLLVLALILLVTSYYSAKRLTEPLEALETGIVDFSKGL----IKRLQKPEG--VVREIA 365
L + V+ L+ +Y+ ++L+ +++L+ + GL ++ L + G ++ ++A
Sbjct: 201 LGITVMGLLWFFVTYFVTRQLSLIVDSLQQLSLSEDGGLSLREVEHLSRMPGGGLLTDMA 260
Query: 366 TLSHKFNEMAEVLEEREQALLDSRGNRFATLIDGMSDKSFYCSMTPDGNIDQVSAGVEKV 425
F E A V QA L++ +LI GM D + P G ++ E +
Sbjct: 261 KAVLAFRE-AVVARGHMQAALEAERQHLKSLIQGMPDLVWL--KDPAGIYLACNSRFESL 317
Query: 426 LGISPEVLKRKYQRLFSSNAINE--QNWQFMEMALRGEAVPPHQVEMAGADGSLRRLDLF 483
G + + F + + ++ MAL G A + + ADG ++
Sbjct: 318 FGHREAEIVGRTDYDFVGRELADFFRDNDRRAMAL-GHASRNEEWLVFAADGHRELVETI 376
Query: 484 MQPLLDDEGQLISVEMLFNDVT---EQFSAAAWSNAVLEAAPEAMLI----VDESGQLVF 536
P+ D +G ++ V + D+T + S A L+ I +D L+
Sbjct: 377 KTPIYDRDGVVLGVLGVARDITPLHQSQETLRQSEAALKRTQTVARIGSWKIDIPANLLH 436
Query: 537 SNSRCQELFGYSGEEMLNLN-IDALIPENERHGHQGKRQLFIEGGRDKVMANGKPLHALK 595
+ L G + + + A + ++R + +EG + +K
Sbjct: 437 WSEEAHHLLGVPWDHGVGFDEFLAQVHGDDRAWVRSAWLAALEGAEFDIEHRMVVDGTVK 496
Query: 596 CGGEQFPVQIGLSLLPADSRGQRQVAASIRDLTEQLAVERQIRESESRFRGLVSNIPGAV 655
++ ++ + P G Q +I+D +E L ++ E FR + + A+
Sbjct: 497 WVRQRAELEFDEAGKPLRGIGMVQDITAIKDASETL------KQREKIFRSITNQ--AAI 548
Query: 656 YRTRING-TWTMEYVSDNITELTGYPAWHFIESKKRSFGSLILDEDAERCDAIISGALAE 714
I+ T T +D E GY F K S + D DA + LA+
Sbjct: 549 GIVLIDAETMTFAEFNDAACECLGYTREEF---AKLSVYDIQGVHDRAGVDARRAQILAQ 605
Query: 715 QHAFEVEYRIRHRDGSLR--WVHEKGKASYDEDG-NPVWFDGSLNDITESKLAQERIEQS 771
+ A E + RH+DGSLR WV K D + VW DITE+K + + +
Sbjct: 606 REA-AFENQRRHKDGSLRDFWVTVKVLRLNGRDYLSSVW-----TDITEAKENERALLRY 659
Query: 772 REQLETI 778
+ QLE +
Sbjct: 660 QNQLEEL 666