Pairwise Alignments

Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  546 bits (1408), Expect = e-159
 Identities = 347/871 (39%), Positives = 504/871 (57%), Gaps = 36/871 (4%)

Query: 904  RALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADL--MHPEDRALATGL 961
            +A+ D+    +   D  G    CN  +    G+    +  K + +L  +  E++     +
Sbjct: 445  QAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVRELPFLSEEEKQELQAV 504

Query: 962  YQALAESEQGSISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMSIANITRLKLLSD 1021
             +A+   +   +  E ++   DG        A+     DG    +V  + +I+  KL+ +
Sbjct: 505  SEAIIR-DGIMMHRELQLPFADGLRHDTLYWANGFSREDGTPGGMVGVVVDISERKLMEE 563

Query: 1022 ELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERA 1081
            EL  A+  A+ A +AKS FLANMSHEIRTPMNAIIGM+ L ++TEL  KQR+YV KI  A
Sbjct: 564  ELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNA 623

Query: 1082 SKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPG 1141
            + SLLGIINDILDFSKIEAGKL +E VPF L+ +L+++  +  +KA +K LELLF+V  G
Sbjct: 624  AISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAG 683

Query: 1142 VPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLT 1201
             P  L GDPLRL+Q+L NL++NAIKFTERG++ L+   + +  D+V+L+F + D GIG++
Sbjct: 684  TPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMS 743

Query: 1202 AEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVS 1261
             EQ   LF++F+QAD STTRKYGGTGLGL+I ++LVE+MGG I  DS  G GSTF FT  
Sbjct: 744  REQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAW 803

Query: 1262 VKVAQN--AQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCA 1319
               A+       +   L G+ VLV DDN  AR+IL   L+ +    D   SG EAL +  
Sbjct: 804  FGRAEELARPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLT 863

Query: 1320 ERD-----YRIALIDWKMPEMDGTETAARMREL---KQPPLILMVSAHANSEFIDKVEEM 1371
            E       YR+  +DW+MP++DG  T  ++++     Q P ++MV+A+   E   + E +
Sbjct: 864  EMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRRQTENL 923

Query: 1372 GINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMD-AQKLSGLKGKRILLVEDNEM 1430
            GI G + KP+SAS L D ++S +           A P+  A   + + G RILL EDNE+
Sbjct: 924  GICGILVKPVSASTLFDVLVSLVDAD-----NAPATPLHIAAPQTRIDGMRILLAEDNEI 978

Query: 1431 NQEVASEFLEQVGVVLSIADNGQIA---LEKLGQQSFDLVLMDCQMPVMDGYQATRELRK 1487
            NQ++A E L+ +G  +++A +G  A   LE+    SFDLVLMD QMP +DGY AT  LR 
Sbjct: 979  NQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDATERLRC 1038

Query: 1488 LPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYLCPEAKGLESA 1547
                A LP++AMTA+AM  ++E CL  GMNDH+AKPI+   L  TL ++   E +   SA
Sbjct: 1039 QQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARWY--EERPGASA 1096

Query: 1548 DADAAADQEVTSLTSWPEHEDLDIDRGLQLVQNSERLYRRILERFVTSQAQAGKKIRKAL 1607
             A   A     +L   P    ++  +GL  +  ++ LYRR+L RFV +Q   G+ IR+AL
Sbjct: 1097 PAPTPAKDGTDAL---PPIPGVNTTQGLARMAGNQALYRRLLLRFVDTQTGTGEHIRQAL 1153

Query: 1608 ALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACEAELEAVETRLVTIVA 1667
            A G    A  LAHTLKGVAGN+ A+ L ++A  L+  L + +    +LE++  RL   +A
Sbjct: 1154 ADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQALRRNDGQGQKLESLRQRLAEELA 1213

Query: 1668 AIERWMTEGVEEQG---VESGEPLSAD---ALKEVLNTLVTQLEDADADAVSTLESLSGQ 1721
            A+   +   + E+G        PL AD     +++L  L  QLE ++  A   L   S  
Sbjct: 1214 AVTGAIAAALAEEGGPAPTQAAPLDADQRHRARQLLAELAEQLEASEIHA-GQLFRESRA 1272

Query: 1722 VVAGIW--ARLKPVSQMVAGYQFDDGADLVR 1750
            ++AG+   A L  + + +A Y +D   ++ R
Sbjct: 1273 LLAGLLPPADLTGLEKAIADYDYDRALNIAR 1303



 Score = 33.1 bits (74), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 705 DAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLA 764
           +AII   +      ++ +    R  +L W +   +    EDG P    G + DI+E KL 
Sbjct: 506 EAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSR----EDGTPGGMVGVVVDISERKLM 561

Query: 765 QERIEQSREQLETITES 781
           +E + ++R   E  TE+
Sbjct: 562 EEELRRARATAEEATEA 578