Pairwise Alignments
Query, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3
Score = 446 bits (1146), Expect = e-128
Identities = 363/1273 (28%), Positives = 620/1273 (48%), Gaps = 101/1273 (7%)
Query: 516 AVLEAAPEAMLIVDESGQLVFSNSRCQELFGYSGEEMLNL-NIDALIPENERHGHQGKRQ 574
++LE + + ++ D +G + N + LFG++ E L L + + ++P + Q
Sbjct: 350 SMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQA--- 406
Query: 575 LFIEGGRDKVMANGKPLHALKCGGEQFPVQIGLSLLPA-DSRGQRQ-VAASIRDLTEQLA 632
LF E K + N H G + + LP D G ++ +IRD+T Q
Sbjct: 407 LFAEVLAGKTVLNRVSRHQRADGSN---LSTSTTALPIYDEHGDIVGLSQTIRDITAQQD 463
Query: 633 VERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSD----NITELTGYPA---WHFI 685
ER I + V+ A+ + + ++ ++ ++T+L G HF
Sbjct: 464 AERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFC 523
Query: 686 ----ESKKRSFGSLILDEDAERCDAIISGALAEQ----HAFEVEYRIRHRDGSLRWVHEK 737
+++ G + DA A+ EQ ++ E R +D L+W
Sbjct: 524 LISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTV 583
Query: 738 GKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVYQL-VWRSERD 796
+ +DE G F DITE KLAQ IE++R + T+ +V ++ + ++
Sbjct: 584 IGSVFDEHGQVERFVALQTDITERKLAQ--IEKNR--IATLLTNVLDAASEMTIIAADPQ 639
Query: 797 RRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEE----------DRGEIIQ-----MLA 841
T + A L + E++ I +E + G+ IQ +
Sbjct: 640 GIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHK 699
Query: 842 GRHGMQWTKAFRYHFPSGELRWLEAGARGSKQQDALVWNGYL---MDISGRKRMETELAQ 898
R T+ + Y G + + D + GYL +DIS + L
Sbjct: 700 AREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEIL-GYLGIGVDISQIVAQQEALLT 758
Query: 899 SEAHFRALFDNAGIGI---------VNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADL 949
+ H + A +GI + +DR + + G+S + + +
Sbjct: 759 ASNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMR----- 813
Query: 950 MHPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMS 1009
+HP+D A + E ++ +R+L DGE+ ++ A + + G V+
Sbjct: 814 VHPDDVIEAEETLKRAVEHDE-PYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGI 872
Query: 1010 IANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDR 1069
+IT + L L AK++AD AN AKS FLANMSHEIRTPMNA++GM QL T L
Sbjct: 873 NIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV 932
Query: 1070 KQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAAD 1129
+Q+ YV K + A+KSLLG++NDILDFSKI+AGKL +++ P ++ ++ DL + S +
Sbjct: 933 QQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGN 992
Query: 1130 KQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQL 1189
+E++F + +P L D LRL Q+LINL NA+KFT G+V++ + L + + V +
Sbjct: 993 SDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTV 1052
Query: 1190 KFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQ 1249
+F++ DSGIG++ EQ ++F F QA++ST+R++GGTGLGLAI K+LVELMGG++ V S+
Sbjct: 1053 QFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSK 1112
Query: 1250 FGNGSTFYFTVSVKVAQNAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSAR 1309
G GS F+F ++ V + + N +L G +LVVDDN +IL L G V++A
Sbjct: 1113 VGVGSRFWFDLTFPVME-VEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETAS 1171
Query: 1310 SGMEALEKCAE-----RDYRIALIDWKMPEMDGTETAARMREL---KQPPLILMVSAHAN 1361
G +A+EK + + + + L+DW+MP++DG +TA ++ PL++M++A+ +
Sbjct: 1172 GGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGH 1231
Query: 1362 SEFIDK--VEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKG 1419
+ + + ++TKP+++ L + +++A+ +G K + +P + L+GL
Sbjct: 1232 EVIAESQHINNVPFVNFLTKPVTSQILAEAVLNAI--EG-KTMDANPKPRSQRLLAGL-- 1286
Query: 1420 KRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKL--GQQSFDLVLMDCQMPVMD 1477
+L+VEDN++N+EV E L G + +A+ G + ++ FD V+MD QMP +D
Sbjct: 1287 -TLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDID 1345
Query: 1478 GYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537
G +ATR +R +LP++AMTANA DK+ CL AGMN H++KPI+ +Q L
Sbjct: 1346 GLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPID--------MQQL 1397
Query: 1538 CPEAKGLESADADAAADQEVTSLTSWP--EHEDL--DIDRGLQLVQNSERLYRRILERFV 1593
P L DA A+ E L + E E L DI L+ ++ + ++ F
Sbjct: 1398 LPNILRLVGRDAAQFAEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFA 1457
Query: 1594 TSQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACEA 1653
+ +++ ++H +KG+A N A L A LE + Q
Sbjct: 1458 PEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELL 1517
Query: 1654 ELEAVETRLVTIV-AAIERW-----MTEGVEEQGVESGE-PLSADALKEVLNTLVTQLED 1706
E++ L +++ +IE+ T+ + Q ES + +++ L+ L + L++
Sbjct: 1518 EIKRWTDTLESLINQSIEQLSGFLPKTQLKQSQSSESANGVVDIQSVRAELDNLASLLQE 1577
Query: 1707 ADADAVSTLESLS 1719
+ +AV+ ++ L+
Sbjct: 1578 NNLEAVTLVDKLA 1590
Score = 53.5 bits (127), Expect = 2e-10
Identities = 85/455 (18%), Positives = 173/455 (38%), Gaps = 42/455 (9%)
Query: 351 IKRLQKPEGVVREIATLSHKFN-EMAEVLEEREQALLDSRGNRFATLIDGMSDKSFYCSM 409
I+ + + R I L+ ++A+ +QALL+++ L+D ++ + Y
Sbjct: 455 IRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQA-----LLDTINQQLHYSVT 509
Query: 410 TPDGNIDQVSAGVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVE 469
DG I V+ + G + E L K + S + W+ M ++ ++
Sbjct: 510 DLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEIC 569
Query: 470 MAGADGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAAAWSNA-------VLEAAP 522
G D L+ D + + D+ GQ+ L D+TE+ A N VL+AA
Sbjct: 570 NRGKDQQLKWFDTVIGSVFDEHGQVERFVALQTDITERKLAQIEKNRIATLLTNVLDAAS 629
Query: 523 EAMLI-VDESGQLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGR 581
E +I D G + N + + YS EE++ A + + +L +E G+
Sbjct: 630 EMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARA-AELSVEYGQ 688
Query: 582 ---------DKVMANGKPLHA---LKCGGEQFPVQIGLSLLPADSRGQRQVAASIRDLTE 629
K G ++ G Q P+ + ++ + + G+ I
Sbjct: 689 KIQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAMRGND-GEILGYLGIGVDIS 747
Query: 630 QLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNIT-ELTGYPAWHFIESK 688
Q+ +++ + S + + G WT + +++ + + ES
Sbjct: 748 QIVAQQEALLTASNHLSKAAEVAKL-------GIWTWNLLDNSLQWNDRMFAMYDQPESL 800
Query: 689 KRS------FGSLILDEDAERCDAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASY 742
K+ + + +D + + A+ +E +RI DG +R+V K
Sbjct: 801 KQQGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILTTDGEVRYVQAAAKIER 860
Query: 743 DEDGNPVWFDGSLNDITESKLAQERIEQSREQLET 777
D G+ + G DIT + ++ + ++++ +T
Sbjct: 861 DRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADT 895
Score = 35.8 bits (81), Expect = 4e-05
Identities = 122/586 (20%), Positives = 214/586 (36%), Gaps = 96/586 (16%)
Query: 380 EREQALLDSRGNRFATL---IDGMSDKSFYCSMTPDGNIDQVSAGVEKVLGIS-PEVLKR 435
+R+Q +L + R + L +DG+ S GNI + G E++ G + PE L
Sbjct: 336 QRKQQVLAEQARRASMLEHSLDGI------ISYDLAGNITSWNQGAERLFGFTEPETLGL 389
Query: 436 KYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAGADGSLRRLDLFMQPLLDDEGQLI 495
L +I + L G+ V ADGS P+ D+ G ++
Sbjct: 390 PSSELIVPPSIVLEEQALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIV 449
Query: 496 SVEMLFNDVTEQFSAAAW---SNAVLE--------AAPEAML----------------IV 528
+ D+T Q A NA LE A +A+L +
Sbjct: 450 GLSQTIRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVT 509
Query: 529 DESGQLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGRDKVMANG 588
D G ++ N + GY+ EE++ A++ E F + +++ A G
Sbjct: 510 DLDGVILDVNEHFCLISGYAREELVG-KTHAVLKSGEHDA------AFWKAMWEQIKA-G 561
Query: 589 KPLHALKC--GGEQ----FPVQIGLSLLPADSRGQRQVAASIRDLTEQLAVERQIRESES 642
K H C G +Q F IG S+ + +R VA D+TE+ + + ++
Sbjct: 562 KSWHGEICNRGKDQQLKWFDTVIG-SVFDEHGQVERFVALQ-TDITERKLAQIE----KN 615
Query: 643 RFRGLVSNIPGAVYRTRI-----NGTWT---------MEYVSDNITELTGYPAWHFIESK 688
R L++N+ A I G T + Y ++ I T +H +
Sbjct: 616 RIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEI 675
Query: 689 KRSFGSLILD--EDAERCDAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASYDEDG 746
L ++ + + D + A E +R +DGS + A DG
Sbjct: 676 AARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVR-KDGSQLPISLSVTAMRGNDG 734
Query: 747 NPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVY-------QLVWRSERDRRF 799
+ + G DI++ QE + + L E ++ L W DR F
Sbjct: 735 EILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVAKLGIWTWNLLDNSLQW---NDRMF 791
Query: 800 TFLSS-AAMATLGFHRNEVLDNFELVAERIVEEDRGEIIQML--AGRHGMQWTKAFRYHF 856
++ G ++E R+ +D E + L A H + FR
Sbjct: 792 AMYDQPESLKQQGL-------SYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILT 844
Query: 857 PSGELRWLEAGARGSKQQDALVWN--GYLMDISGRKRMETELAQSE 900
GE+R+++A A+ + + V G +DI+ ++++E L ++
Sbjct: 845 TDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAK 890