Pairwise Alignments

Query, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella amazonensis SB2B

Subject, 572 a.a., single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  247 bits (631), Expect = 8e-70
 Identities = 175/569 (30%), Positives = 288/569 (50%), Gaps = 44/569 (7%)

Query: 20  LHPLIKQLLARRGV--AGDDCE---QELSRLLRPETMLGLDRAACLLADAAMASKRMLIV 74
           + P++ QLL +RG+  AGD  +    +L  L  P  M  +D A   L  A    +R+LI 
Sbjct: 27  ISPILGQLLVQRGITKAGDAKKFFRPQLPDLHDPFLMKDMDIAVERLNKAMGKKERILIY 86

Query: 75  GDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALAVEKGAEVLITVD 134
           GD+D DG T+ ++    ++       D+ IP+R++ GYG+S   V  A E G  ++I +D
Sbjct: 87  GDYDVDGTTAVALVYKFIQQF-YSNIDYYIPDRYNEGYGISKKGVDYASETGVGLIIVLD 145

Query: 135 NGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFASKSIAGVGVAFY 194
            GI ++E +  AK  G+  +I DHH+P  +LP A AI+N  +   T+    ++G GV F 
Sbjct: 146 CGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAILNAKRLDNTYPYTHLSGCGVGFK 205

Query: 195 LMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNRILVDAGLKRVRA 254
            M A              GI+  +L  L+D+VA+   +D+V +   NRIL   GLK++ +
Sbjct: 206 FMQAFAI---------NNGIEFHHLIPLLDLVAVSIASDIVPIMGENRILAYHGLKQLNS 256

Query: 255 GRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVETLLCDDIMYARR 314
                G+ A+++V   +      +D  F +GPR+NA+GR+      V+ L   D   A  
Sbjct: 257 NP-SVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQNGKEAVDLLTEKDFSAALE 315

Query: 315 MAAELDGLNQERRELETGMQAEALKSLERLQ-LEESQLPWGIALYQDDWHQGVIGILASR 373
            A +++  N+ R++L+  M  EA   +  L+ L E +    I LY ++WH+GVIGI+ASR
Sbjct: 316 KAGQINQYNETRKDLDKSMTEEANNIVANLEGLSERR---SIVLYNEEWHKGVIGIVASR 372

Query: 374 IKDKYHRPVIAFAEASDNEVKGSARSIKGL-------HMRDLLELISSRHPGLIPKFGGH 426
           + + Y+RP +     +D+   GSARS+ G        H RDLLE            FGGH
Sbjct: 373 LTEVYYRPAVVLTR-TDDMATGSARSVSGFDVYKAIEHCRDLLE-----------NFGGH 420

Query: 427 AMAAGLSLAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLIRASG 486
             AAGLS+   +V  F   F++ V + + PE  +  I  D E+    +T +  N ++   
Sbjct: 421 TYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFFNDLKKFN 480

Query: 487 PWGQGFEEPLFDGH--FRLLQQRLVG--EKHLKMMVETECGRLMLDAIAFNVDLKLWPDA 542
           P+G    +P+F  H  +     ++VG  ++H+K+ +       +++ IAF     +    
Sbjct: 481 PFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQSSHVRYIK 540

Query: 543 TVRHVHLAYRLDVNEFRGNQSLQLLVEQI 571
           T R   + Y ++ N  +  + +QL +E I
Sbjct: 541 TKRSFDICYTIEENTHKRGE-VQLQIEDI 568