Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  376 bits (966), Expect = e-109
 Identities = 202/338 (59%), Positives = 247/338 (73%), Gaps = 1/338 (0%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60
           +RKIIH+DMDC+FAAVEMRD P YR   LAVGG   +RGVISTCNY+AR FGVRSAM +A
Sbjct: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64

Query: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120
            ALKLCP L +VPGRM VYK+VSQQI+ IF RYTSLIEPLSLDEAYLDVS+ + YQGSAT
Sbjct: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124

Query: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180
            IA+AIR DI++E  LTASAGV+PIKF+AKVASDLNKP+G YVV+PD +   V +L L K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184

Query: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240
           IPGVGKV  EKL+  GL   ADV++     L   FG+ GA L++++HG DER +V+ RER
Sbjct: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244

Query: 241 KSVGVETTLPKDLHTREACLDVL-SSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTT 299
           KSVGVE T  +++ T + C  V+   L PEL+ RL R+   R I K  +K+KF DF+QTT
Sbjct: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304

Query: 300 IESRAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGL 337
           IE       +  F  LL Q   R +GR IRL+G++  L
Sbjct: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342