Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 352 a.a., DNA polymerase IV from Pseudomonas sp. BP01

 Score =  330 bits (845), Expect = 4e-95
 Identities = 172/337 (51%), Positives = 225/337 (66%), Gaps = 1/337 (0%)

Query: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60
           MRKIIH+D DC++AA+EMRD P+  G+P+AVGGS + RGVI+TCNYEARA+GVRSAM+S 
Sbjct: 1   MRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPEHRGVIATCNYEARAYGVRSAMSSR 60

Query: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120
           +ALK CP+L++V  R E Y+  S++I  IF  YT LIEPLSLDEAYLDVSD   Y GSAT
Sbjct: 61  HALKQCPDLLIVKPRFEAYREASREIHAIFRDYTELIEPLSLDEAYLDVSDSQWYAGSAT 120

Query: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180
           RIAE IR  + +   +T SAGV+P KF+AK+ASD  KPNG +V++P  +  FV AL + +
Sbjct: 121 RIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPGEVEAFVAALPVAR 180

Query: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240
           + GVGKVT +KL  LG+ TC D+++  +  L   FG FG  L+  A G D+RA+ +   R
Sbjct: 181 LHGVGKVTADKLTRLGIDTCLDLREWSRLALVREFGSFGERLWGLARGIDDRAVHNDSRR 240

Query: 241 KSVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTI 300
           +SV VE T   DL    +CL  L  L+  LN R+ R  S  R  K  VK+KF DF QTT+
Sbjct: 241 QSVSVENTYDTDLPDLASCLARLPELLESLNERIARMDSSYRPDKPFVKVKFHDFSQTTL 300

Query: 301 ESRAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGL 337
           E       +  +  LL QAF R  G+ +RL+G+   L
Sbjct: 301 EQAGAGRDLESYRQLLGQAFARG-GKPVRLLGVGVRL 336