Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 418 a.a., DNA polymerase IV-kappa DinB from Caulobacter crescentus NA1000

 Score =  193 bits (490), Expect = 8e-54
 Identities = 121/353 (34%), Positives = 188/353 (53%), Gaps = 10/353 (2%)

Query: 4   IIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAYAL 63
           I H+D D ++A+VE RD P  R  P+ +GG   +RGV++T  Y AR  G +SAM    AL
Sbjct: 38  IAHMDCDAFYASVEKRDDPSLRDLPVIIGGG--KRGVVTTACYIARMSGAKSAMPMFKAL 95

Query: 64  KLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSA-TRI 122
           KLCP+ +++      YK  S++I E   R T LI+PLSLDEA++D++      G+   ++
Sbjct: 96  KLCPDAVVIKPNFAKYKEESRRIHEKLDRLTPLIQPLSLDEAWIDLTGTERLHGATPAQM 155

Query: 123 AEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGKIP 182
              ++++I ++ GLT S G++P KF+AK+AS+L+KP G   +       F+    +  +P
Sbjct: 156 LARLQAEIERDIGLTVSVGLAPNKFLAKIASELDKPRGFSAIGAAEAQSFLANKPVNILP 215

Query: 183 GVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRERKS 242
           GVG  T   L  +GL+T  D+      LL    G  G  L+  AHG+D R +   + RK+
Sbjct: 216 GVGPATVASLAEIGLRTVGDIAAADLKLLANRLGSGGMRLHRLAHGQDSRIVDPDQARKT 275

Query: 243 VGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTIES 302
           +  ETT   DLH RE   D L  L  ++ ++  +     R+  L  KL+  DF+  T   
Sbjct: 276 ISAETTFNDDLHKREDLEDELWPLCEKVAKQARQEGVAGRVATL--KLRTPDFKIHTRRR 333

Query: 303 RAEEPSV---RLFESLLSQAFVRAEGRGIRLVGIAAGLVCRSEAEQEGSAQLA 352
               P+     LF+  +++  + AE RG+    I AGL    +A+  G+   A
Sbjct: 334 TLAVPTQTARTLFQ--VARELLSAEPRGLAYRLIGAGLTEFVDADTAGADMFA 384