Pairwise Alignments

Query, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

Subject, 353 a.a., DNA damage-inducible protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  248 bits (632), Expect = 2e-70
 Identities = 147/344 (42%), Positives = 206/344 (59%), Gaps = 9/344 (2%)

Query: 9   MDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAYALKLCPN 68
           MD ++A+VE RD P+ RGKPLAVG  ++ RGV++  +YEAR +GVRSAM+S  A +LCP 
Sbjct: 1   MDAFYASVEQRDHPELRGKPLAVG-HAEERGVVAAASYEARRYGVRSAMSSQKAKRLCPQ 59

Query: 69  LILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSATRIAEAIRS 128
           LI V GRM+VYK+VS+QI EIF  YT +IEPLSLDEA+LDV++       A  IA+ I+ 
Sbjct: 60  LIFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKGISLAVDIAKEIKL 119

Query: 129 DIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGKIPGVGKVT 188
            I ++  L ASAGVS  KF+AK+ASD  KP+G   + PD  + F+  L +    GVG VT
Sbjct: 120 RIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAGLPIESFWGVGPVT 179

Query: 189 EEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRERKSVGVETT 248
            +K++ LG+     +++    +LT HFGK GA+ YE + G DER + + R RKS+G E T
Sbjct: 180 AKKMHLLGIHNGLQLRKCSLEMLTAHFGKVGALYYECSRGIDERPVEAVRIRKSIGCERT 239

Query: 249 LPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTIESRAEEPS 308
           L +D+    + +  L  +  EL  RL R     + + L +K+KF DF Q T  S  +   
Sbjct: 240 LERDISVHSSVIIELYHVAVELIERLQRKEF--KGNTLTLKIKFHDFSQIT-RSITQSQE 296

Query: 309 VRLFESLLSQA-----FVRAEGRGIRLVGIAAGLVCRSEAEQEG 347
           +   + +L  A      V  E   IRL+G++         EQ G
Sbjct: 297 LYTLDRILPLAKELLKSVEYEQHPIRLIGLSVSNPKEEADEQHG 340