Pairwise Alignments

Query, 443 a.a., multi anti extrusion protein MatE (RefSeq) from Shewanella amazonensis SB2B

Subject, 450 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  188 bits (477), Expect = 3e-52
 Identities = 116/419 (27%), Positives = 210/419 (50%), Gaps = 2/419 (0%)

Query: 12  VSRLFWRYTLPTIASMLVTGIYVTIDGMFVGHFLGETGLAGIMLAYPVGALLYAVGALIG 71
           + +L  +Y +P I +M  + +Y  +D +F+GH +G   ++G+ L +P+  L  A G+L+G
Sbjct: 15  IGKLLMQYAIPAIIAMTASSLYNMVDSIFIGHGVGAMAISGLALTFPLMNLAAAFGSLVG 74

Query: 72  MGAGALVSIKLGEGKTAKARELLGNAFSLVLLSALFFTLVGSVSARHILIWLGAEGEVLE 131
           +GA  LVS+KLG+     A+ +LGN   L ++  L FT++  +    IL + G     + 
Sbjct: 75  VGAATLVSVKLGQKDYDTAQRVLGNVLVLNIIIGLAFTVLTLIFLDPILYFFGGSEATVG 134

Query: 132 SAHDYLFWYFALCIFPLISMAFSTLLRNDGKPAFVTWVLIAGGVINTLLDYLFIVVWDFG 191
            A DY+       +   + +  + +LR+ G P    +  IA  VINT+LD +FI  + +G
Sbjct: 135 YARDYMVVILWGNVITHLYLGLNAVLRSAGHPQKAMYATIATVVINTILDPIFIYGFGWG 194

Query: 192 LAGASVATMLSQAVTGLLCLQHFFSGKTALRIDFEQMRLKLDNCLNISRVGLPSLLMNLY 251
           + GA++AT+ +Q +  L   + F +    L       RLK     +   +G+   LMNL 
Sbjct: 195 IQGAAIATITAQVIALLWQFKLFSNKDELLHFHKGIFRLKKKIVFDSLAIGMAPFLMNLA 254

Query: 252 LSIVLTLHNTALLWVGTPLHVAAYGVVSYTEAFFYLIFEGIALGSQPVLSFNAGAGRMDR 311
              ++ L N  L   G  L + A+G+V+     F +I  G+  G QP+  +N GA +  R
Sbjct: 255 ACFIVILINKGLKQHGGDLAIGAFGIVNRLVFLFVMIVMGLNQGMQPIAGYNFGAKQYPR 314

Query: 312 VRQTRNLAMAVTLLTAGLGLLFIYGRPEWALYIFAGDNPVLSPVAIEGMRLYFWGLPFEG 371
           V Q   + +    +   +G L     P+ A+ IF     +++ ++ +G+R+     P  G
Sbjct: 315 VTQVLKITIYAATIVTTIGFLMGMFIPQLAVSIFTTHEELVN-ISAKGLRIVVMFFPIVG 373

Query: 372 LILVGASFFQAINKPREASILT-GTKLLLIAAVIYSFAWLFGVPGVWVSLACVSSVLTL 429
             +V ++FFQ+I    +A  L+   ++L++   +      +G  GVW+S+     + +L
Sbjct: 374 FQMVTSNFFQSIGMASKAIFLSISRQVLVLIPCLLILPRFYGQLGVWISMPISDLIASL 432