Pairwise Alignments

Query, 517 a.a., proton/peptide symporter family protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 514 a.a., di-tripeptide ABC transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  131 bits (329), Expect = 7e-35
 Identities = 133/540 (24%), Positives = 218/540 (40%), Gaps = 77/540 (14%)

Query: 9   PKQIPYIIASEACERFSFYGMRNILTPFLMTALLLSVPEHLRAGEAKDVFHSFVIGVYFF 68
           PK +  I A+   ERFS+YGMR I   FL  ALL           A  ++ S+   VY  
Sbjct: 8   PKGLYLIFATSTAERFSYYGMRAIFILFLTQALLFDKEA------AASIYGSYTGLVYLT 61

Query: 69  PLLGGWIGDRLFGKYNTILWLSLLYCVGHAFLAIFEDSKTG-------FYTGLFLIALGS 121
           PL+GG+I D+ +G   ++ W +++  VG   + +   S           Y GL  + LG+
Sbjct: 62  PLIGGYIADKYWGIRRSVFWGAVMMAVGQFLMFMSASSLNNTDLAHWLMYGGLGFMILGN 121

Query: 122 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKHFGAAV---- 177
           G  KP VSS +G  ++  +K L   A+ +FY  +N GSF A    PL+    G       
Sbjct: 122 GCFKPTVSSLVGQLYEPGDKRL-DAAYTIFYMGVNVGSFAA----PLICGFLGDTGNPQD 176

Query: 178 ---AFGIPGVLMFIATVFFWAGRHRYVHMPPEPKNPNGFLPVIKTALLSPGANRFG---- 230
               F   G++     V F   +++Y+  P     P G +P  +       A        
Sbjct: 177 FKWGFLASGIMTLFTVVLFETQKNKYLFSPSG--EPIGIVPDARREKKEDKAEHISHPKM 234

Query: 231 ----------LALALMGTVLAVIALGFMP---SLGLVTSLCLALVLLMGFVGSGASMQLD 277
                     +  AL   ++A  +  F     S+G+ T+  +  VL++     G+  +++
Sbjct: 235 DKRTKVRNIIIITALTVALIAFFSYAFSDDWISVGIFTACIVFPVLILL---DGSLTKVE 291

Query: 278 RARARHGDEAVEGVRAVMRILVLFALVTPFWSLFDQKASTWILQANEMTKPE---WFEPA 334
           R+R             +  I ++   V  FW+ ++Q  ++  L A+E T      W  PA
Sbjct: 292 RSR-------------IFVIYIVAFFVIFFWAAYEQAGASLTLFASEQTDRSIFGWEMPA 338

Query: 335 M-MQALNPLLVMILIPFNNFVLYPTLERWGF------RLTALGKMASGIAFSGLSWVVIG 387
              Q+ NPL V+IL       + P +  WGF         +  K A G+    L ++ I 
Sbjct: 339 SWFQSFNPLFVVILA-----YIMPGI--WGFLNKRNMEPASPTKQAIGLLLLSLGYLFIC 391

Query: 388 SIQLMMDGGSAVSIVWQVLPYALLTFGEVLVSATGLEFAYSQAPKTMKGTIMSFWTLSVT 447
                   G  VS++W    Y + T GE+ +S  GL      +P      +M  W LS  
Sbjct: 392 FGVKDAIPGVKVSMIWLTGLYFIHTMGEIALSPIGLSMVNKLSPLRFASLMMGIWYLSTA 451

Query: 448 VGNLWVLLANASVKGQGMTDWIAGTGLSVTAFQMFFFAGFALVAAAVFALYARNYRMQDH 507
             N +  + +      G    I G  ++        F   + VA+ +  L ++  +   H
Sbjct: 452 TANKFAGMLSGLYPEDGKVKSILGYQIATMYDFFMLFVIMSGVASLILFLLSKKLQKMMH 511