Pairwise Alignments

Query, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  181 bits (459), Expect = 6e-50
 Identities = 112/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 249 MVGRMASTGDKLTQLSNRLHDSMSGVNNRMKLQHNQIDVIAHAVGNVSDAVRLISDNAND 308
           MVGR+     +L+Q ++ L  +M         Q ++ D +A A+  ++ +V+ +++NA  
Sbjct: 245 MVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQR 304

Query: 309 ASAAVSDADAKSRDGSALSRKTLDEVLTLANAIERAADASGRLAEDSKSIGKVLDVIKSI 368
            + A S AD+++  G+ +  +T   +  LA  I++A D    L   S  I KVLDVI+ I
Sbjct: 305 TAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGI 364

Query: 369 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQQSTEEIHNMIQRLQARSDDA 428
           AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LAS+TQQST+EI+ MI  LQ  +  A
Sbjct: 365 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQA 424

Query: 429 VNAMSTSQTSVTQCVAFTQQTDERLGQVRQSLQQIVEISSQIASSTTEQMQAIGEISQNA 488
           V  M  S+    Q V    Q    L  +   + +I E+S QIA++  +Q      I+QN 
Sbjct: 425 VEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNI 484

Query: 489 LSIRQLSDDNNHELDRVVDEVAEATGLAGLIHS 521
           +SIR  SD   H +   +     A+G+A L +S
Sbjct: 485 VSIRGGSD---HHVANGLRSRQSASGVAELANS 514