Pairwise Alignments

Query, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  181 bits (460), Expect = 6e-50
 Identities = 106/281 (37%), Positives = 167/281 (59%), Gaps = 7/281 (2%)

Query: 246 LQGMVGRMASTGDKLTQLSNRLHDSMSGVNNRMKLQHNQIDVIAHAVGNVSDAVRLISDN 305
           ++  V ++AS  ++L+ ++ +   + +GVN+    Q  + D +A A+  +S  V  ++ N
Sbjct: 365 IRDSVVQIASAAEELSAVTEQ---TSAGVNS----QKVETDQVATAMHEMSATVAEVARN 417

Query: 306 ANDASAAVSDADAKSRDGSALSRKTLDEVLTLANAIERAADASGRLAEDSKSIGKVLDVI 365
           A  AS A S+AD ++RDG  +  + + ++  LAN + R+ DA   L ++S  IGKV+DVI
Sbjct: 418 AEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVI 477

Query: 366 KSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQQSTEEIHNMIQRLQARS 425
           K++AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQQST EI  ++  LQ+ +
Sbjct: 478 KAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGT 537

Query: 426 DDAVNAMSTSQTSVTQCVAFTQQTDERLGQVRQSLQQIVEISSQIASSTTEQMQAIGEIS 485
               + M  S+      V  ++Q    LG + Q++  I  ++ QIA++  EQ     EIS
Sbjct: 538 RQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEIS 597

Query: 486 QNALSIRQLSDDNNHELDRVVDEVAEATGLAGLIHSDMKRF 526
           ++ +++R +S+      +       E   L G + + + RF
Sbjct: 598 RSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSRF 638



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 19/143 (13%)

Query: 379 AAIEAARAGEQGRGFAVV-ADEVRSLASKTQQSTEEIHNMIQRLQARSDDAVNAMSTSQT 437
           A ++   +G+  +  AV  +DE+  L    Q+    +  +I  ++   D  V   S ++ 
Sbjct: 322 AVVDRIASGDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIR---DSVVQIASAAE- 377

Query: 438 SVTQCVAFTQQTDERLGQVRQSLQQIVEISSQIASSTTEQMQAIGEISQNALSIRQLSDD 497
              +  A T+QT   +        Q VE + Q+A++  E    + E+++NA    Q + +
Sbjct: 378 ---ELSAVTEQTSAGVNS------QKVE-TDQVATAMHEMSATVAEVARNAEQASQAASN 427

Query: 498 NNHEL---DRVVDE-VAEATGLA 516
            + E    D+VV E +A+   LA
Sbjct: 428 ADREARDGDKVVGEAIAQIERLA 450