Pairwise Alignments

Query, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

Subject, 545 a.a., methyl-accepting chemotaxis protein from Pseudomonas aeruginosa PA14

 Score =  181 bits (459), Expect = 6e-50
 Identities = 105/259 (40%), Positives = 161/259 (62%), Gaps = 2/259 (0%)

Query: 238 AFNGFLDHLQGMVGRMASTGDKLTQLSNRLHDSMSGVNNRM-KLQHNQIDVIAHAVGNVS 296
           AFN FLD LQ ++  +     ++   +  L   M+  N+R+   +H  +D ++ A   +S
Sbjct: 255 AFNAFLDKLQPLIREVGRVTGEVADSAGSLA-GMTAANDRLINSEHASVDQVSTAATQMS 313

Query: 297 DAVRLISDNANDASAAVSDADAKSRDGSALSRKTLDEVLTLANAIERAADASGRLAEDSK 356
            AV  ++ NA  A+    DA  ++R+G+ +   T++ +  LA  +E ++++  +LA+++ 
Sbjct: 314 SAVHEVARNAQSAAQVAHDARRQAREGANVVEATIEVIRQLAREVESSSESIQQLAQETA 373

Query: 357 SIGKVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQQSTEEIHN 416
           SI  VL VIK IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA++TQ+ST++I  
Sbjct: 374 SIDAVLTVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQESTKDIQA 433

Query: 417 MIQRLQARSDDAVNAMSTSQTSVTQCVAFTQQTDERLGQVRQSLQQIVEISSQIASSTTE 476
            I+RLQA   +AV AM +        V      D  L     ++ +I ++++QIAS+  E
Sbjct: 434 RIERLQAGVQNAVRAMQSGSLKARDSVERAAGVDGVLAATGDAVGRINDLAAQIASACEE 493

Query: 477 QMQAIGEISQNALSIRQLS 495
           Q + I EI++N   +R+LS
Sbjct: 494 QSRVIDEIARNISEVRELS 512