Pairwise Alignments

Query, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

Subject, 712 a.a., methyl-accepting chemotaxis protein from Pseudomonas aeruginosa PA14

 Score =  189 bits (479), Expect = 4e-52
 Identities = 116/298 (38%), Positives = 170/298 (57%), Gaps = 4/298 (1%)

Query: 223 DLTHRTNASNNPQ----SLAFNGFLDHLQGMVGRMASTGDKLTQLSNRLHDSMSGVNNRM 278
           DLT R ++    +    +  FN FL  LQ M+G++  +  K++  S    D     N  +
Sbjct: 403 DLTRRLSSERADELGSIAKGFNTFLGKLQNMIGQVVQSVQKVSDSSEHTADIAIRTNQGV 462

Query: 279 KLQHNQIDVIAHAVGNVSDAVRLISDNANDASAAVSDADAKSRDGSALSRKTLDEVLTLA 338
           + Q  +I+++A AV  ++   + ++ NA  A+ A + AD  +  G  +   +   +  LA
Sbjct: 463 QQQLAEIELVATAVHEMTATAQDVARNATHAAEAANHADQAAHQGKQIVESSSAAIQALA 522

Query: 339 NAIERAADASGRLAEDSKSIGKVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 398
           + I RA      LA+DS++I  +L  I+ IAEQTNLLALNAAIEAARAGEQGRGFAVVAD
Sbjct: 523 SEIGRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 582

Query: 399 EVRSLASKTQQSTEEIHNMIQRLQARSDDAVNAMSTSQTSVTQCVAFTQQTDERLGQVRQ 458
           EVR+LA KTQQ+TEEI +MIQ+LQ  + D V  M  SQ      V   +Q  E L  + Q
Sbjct: 583 EVRNLAQKTQQATEEIQSMIQQLQQGTRDVVKVMQDSQDRTDDSVRHARQAAEALESITQ 642

Query: 459 SLQQIVEISSQIASSTTEQMQAIGEISQNALSIRQLSDDNNHELDRVVDEVAEATGLA 516
           ++  I ++++QIAS+  EQ     +I++N  +I Q+++      D      AE T LA
Sbjct: 643 AVSVINDMNTQIASAAEEQSAVAEDINRNVANIGQVANQVAGGADEASQASAELTRLA 700



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 47/246 (19%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 204 AEVSFDIQAVAHHLTGEQIDL----THRTNASNNPQSLAFNG---------FLDHLQGMV 250
           AE+     AV H +T    D+    TH   A+N+    A  G          +  L   +
Sbjct: 467 AEIELVATAV-HEMTATAQDVARNATHAAEAANHADQAAHQGKQIVESSSAAIQALASEI 525

Query: 251 GRMASTGDKLTQLSNRLHD---SMSGVNNRMKLQHNQIDVIAHAVGNVSDAVRLISDNAN 307
           GR       L + S  ++    ++ G+  +  L      + A   G       +++D   
Sbjct: 526 GRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 585

Query: 308 DASAAVSDADAKSRDG-SALSRKTLDEVLTLANAIERAADA---SGRLAEDSKSIGKVLD 363
           + +     A  + +     L + T D V  + ++ +R  D+   + + AE  +SI + + 
Sbjct: 586 NLAQKTQQATEEIQSMIQQLQQGTRDVVKVMQDSQDRTDDSVRHARQAAEALESITQAVS 645

Query: 364 VIK-------SIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQQSTEEIHN 416
           VI        S AE+ + +A +     A  G+     A  ADE    +++  +  E+   
Sbjct: 646 VINDMNTQIASAAEEQSAVAEDINRNVANIGQVANQVAGGADEASQASAELTRLAEQQRR 705

Query: 417 MIQRLQ 422
           ++ + +
Sbjct: 706 LVNQFR 711