Pairwise Alignments

Query, 479 a.a., transporter, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 582 a.a., glycerol ABC transporter, substrate-binding component (from data) from Herbaspirillum seropedicae SmR1

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 73/295 (24%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 39  ITLVAETGFWTDYLQTKMLPAFTRQTGIEVKVVSTQLDDMFNLQQASLRMAKGEFDLLSM 98
           I +V+ET     Y    +  AF   TGI+V     Q  D+    Q SL+  K  +D    
Sbjct: 73  IHVVSETLDTHAYESKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSLQSGKSIYDGWVN 132

Query: 99  EAGWAKEWAANGYTVPLEE-LAGLYDPGGTKAMSRYLEPYYPSLLSILSYRGEVHAIPYN 157
           ++        NG TV L + +AG   PG            +       +  G+++ +P  
Sbjct: 133 DSDLIGTHYRNGQTVVLTDYMAG---PGKEYTNPGLDLKDFIGTSFTTAPDGKLYQLPDQ 189

Query: 158 NYVMGNHFRRDLFENADEQKHFLERYGYPLKAPDTLVQLKDIAEFFTRKPGDVLAGKLLK 217
            +     FR D F   D Q+ F  +YGY L  P      +DIA FFT    ++   K+  
Sbjct: 190 QFANLYWFRADWFARKDLQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKELDGKKIYG 249

Query: 218 QPFYGVALMSGNKPHINDEFSAILWSMG-------------DRWFTPVYEDNGRLNHFEV 264
              YG        P +   F+    SM              D W   V +D        V
Sbjct: 250 HMDYG-----KKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVGASV 304

Query: 265 SRNLDKKLQVA-----NYYQSIKPFAIPADDAFAFNEAADALANGRVAMWPFAYN 314
           +R        A      Y   +K +A P      F+EA    A G +A   F Y+
Sbjct: 305 ARGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYS 359