Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  381 bits (978), Expect = e-109
 Identities = 225/547 (41%), Positives = 308/547 (56%), Gaps = 9/547 (1%)

Query: 873  EQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQLQFSCY----PD 928
            E+LR      +   EG+ + D     V VN A   I    +D  +G +          PD
Sbjct: 80   ERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKSGRHGPD 139

Query: 929  AYSEQVRIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSDISRRK 988
             Y +     L  QG WS E+ +RR     +    T+  I D+ G +SH+V VFSDIS  K
Sbjct: 140  FYRDMFTS-LDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSDISAIK 198

Query: 989  QQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHH----TLMVLDLDNFKKINDSLG 1044
              E EL  L ++D LTGLPNR          +     H     L++LDLD+FK INDSLG
Sbjct: 199  DSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNINDSLG 258

Query: 1045 HQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAFVAP 1104
            H VGDELL+ V+ R         +L RLGGDEFAVL++     G AAA+A+ ++DA   P
Sbjct: 259  HNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDALKEP 318

Query: 1105 FELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNAL 1164
                   L +  SIGI L+P D  +   LLR AD A++ AKSAG + Y  Y+E L  +A 
Sbjct: 319  LRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAHAQ 378

Query: 1165 RQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSEFIPLAE 1224
            +++E+   +R  L+     V+YQP  DL  SR+ G+EALVR  HPT+GL+ P+EFIP+AE
Sbjct: 379  QRVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPIAE 438

Query: 1225 ETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLTKL 1284
             TGLI ++   VM +AC    +W++ G+    VAVN+SSR FA  +L  ++  +L  T L
Sbjct: 439  RTGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRLFARRELYDQVAQVLHDTGL 498

Query: 1285 PAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKI 1344
                LELE+TE  V+  PE A++ M +L ++GV LA+DDFGTGYSSL  LKR P+  LKI
Sbjct: 499  DPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKI 558

Query: 1345 DKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYIYS 1404
            D+ FV  +   + D  +V  II +AH+MG+ V  EG+E   Q   L    CE  QGY + 
Sbjct: 559  DQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQGYWFG 618

Query: 1405 KAVPEAE 1411
            + V  A+
Sbjct: 619  RPVAAAQ 625