Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1282 a.a., diguanylate phosphodiesterase from Pseudomonas fluorescens FW300-N2C3

 Score =  401 bits (1030), Expect = e-115
 Identities = 218/574 (37%), Positives = 340/574 (59%), Gaps = 17/574 (2%)

Query: 860  GTIKNINNFKQAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDIC------LMDK 913
            G  ++I+  ++AE+ LR+     E+ +  + I D     V+ NEA   +       ++D+
Sbjct: 706  GVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQ 765

Query: 914  DSFIGTQLQFSCYPDAYSEQVRIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGT 973
               +   L      +A+   V   L+Q   W  EV  +R +   +   + + A+ D++G 
Sbjct: 766  ---LPNMLTVDEQQEAHLRYVLKQLQQHSTWEGEVWLKRRNGEHYPAWVGITAVLDDEGD 822

Query: 974  LSHFVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRS----NLQVSLNNLVKKDTHHTLM 1029
            L+ +V  FSDIS RK  E+ + +L   D LT LPNR+     L  +L +  ++ T   LM
Sbjct: 823  LASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKTWVVLM 882

Query: 1030 VLDLDNFKKINDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLD----KDP 1085
             LDLD FK INDSLGH  GD +L+ ++ R+   +    ++ R+GGDEF +LL     ++ 
Sbjct: 883  FLDLDRFKPINDSLGHAAGDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASRET 942

Query: 1086 DIGSAAAIAKGLVDAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAK 1145
             +  A A+A+ ++ + V PF L G +  V  SIGI L P+D      L++ AD AMYHAK
Sbjct: 943  ALNRAIAVAEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAK 1002

Query: 1146 SAGGNRYQFYSESLNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVR 1205
              G N +QFY   +N +AL +LE+E+ +R  L  + F +YYQP+      R+ G EAL+R
Sbjct: 1003 ERGKNNFQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLR 1062

Query: 1206 LNHPTQGLIPPSEFIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQ 1265
              HP +GL+PP +FIP+ EE GL+V++GD V+ +AC   + W +  +   +V+VN+S+RQ
Sbjct: 1063 WRHPRRGLVPPGDFIPVLEELGLVVDVGDWVITEACRQLRTWHQAKVRVPKVSVNISARQ 1122

Query: 1266 FALTDLQQRIESILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFG 1325
            F+   L  RI +ILR T LP A LELE+TE  ++++  +A++++  L  +G+S+A+DDFG
Sbjct: 1123 FSDGQLGTRIANILRSTGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFG 1182

Query: 1326 TGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPS 1385
            TGYSSL+YLK+FPI  LKID+ FVD +   ++D ++  +II +AH++ L V+ EGVE   
Sbjct: 1183 TGYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1242

Query: 1386 QLNILRALKCEEVQGYIYSKAVPEAEFTTLLKQD 1419
            QL+ LR   C+EVQGY++ + +P   F      D
Sbjct: 1243 QLDFLREHGCDEVQGYLFGRPMPANRFEAQFSND 1276



 Score = 44.7 bits (104), Expect = 6e-08
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 28/231 (12%)

Query: 790 HRSGKDDEESNIHPQDQERVREA-LNRHFYGETDHFEAAYRVKGKDGHWVWILDRAKIVE 848
           H+ G+   E  +H  D +      L +   G T   +   R + ++G W     R + + 
Sbjct: 495 HQMGEYFWEILLHSDDADHYHNLRLEQRRGGYTQLLQCQLRFRHRNGKWRCFDIREQALA 554

Query: 849 RDDSENALRMTGTIKNINNFKQAEEQLRLFERAI----ENISEGMFILDHEFRFVEVNEA 904
           RD  +   R+ G  K++    +A E LR  E+      E+IS+ +F  D++     V+ +
Sbjct: 555 RDRHDQVTRIIGVAKDVTEQIEASESLRDSEQRYRMLAESISDVIFSTDNKLSLNYVSPS 614

Query: 905 CCDICLMDKD--------SFIGTQLQFSCYPDAYSEQVRII-----------LRQQGRWS 945
              +     D        S I    Q +     YS   R+            LR Q +  
Sbjct: 615 VQAVLGYTADWIFQNGWQSIIANPQQLT---GIYSLMDRVSKALDKPEHLAELRNQMQTQ 671

Query: 946 AEV-ESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSDISRRKQQEEELR 995
             + +  R D     +EL +  ++DE G     +GV  DIS++++ E++LR
Sbjct: 672 LFLFDCLRADGRKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLR 722