Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  378 bits (971), Expect = e-109
 Identities = 223/546 (40%), Positives = 317/546 (58%), Gaps = 10/546 (1%)

Query: 872  EEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGT--QLQFSCYPDA 929
            E  L+      ++  EG+ + D   R V VN A   I     +  +G   +L  S   DA
Sbjct: 76   ETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDA 135

Query: 930  -YSEQVRIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSDISRRK 988
             + +Q+ + L+ +G WS E+ +RR +   +     +  I+D QG LSH+V VFSD+S  K
Sbjct: 136  EFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLSHYVAVFSDLSALK 195

Query: 989  QQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHH----TLMVLDLDNFKKINDSLG 1044
            +  EEL +L + D L  LPNR          +++   H     L+++DLD+FK IN+SLG
Sbjct: 196  RSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESLG 255

Query: 1045 HQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAFVAP 1104
            H +GD LLQ VS R+S  L    +L RLGGDEFA+L +       A A+A  ++D     
Sbjct: 256  HSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCE-GYGAEKATALALRILDRLNES 314

Query: 1105 FELAGEKLVVGVSIGIVLYP--EDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRN 1162
            F +  ++L    SIGIVLYP   D QN + L+R AD A++ AKS+G + Y FYSE L   
Sbjct: 315  FHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTSQ 374

Query: 1163 ALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSEFIPL 1222
            A +++E+   +R  L      ++YQP  DLR   ++G EALVR  HP +GLI P  FIP+
Sbjct: 375  ARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPI 434

Query: 1223 AEETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLT 1282
            AEETGLI  I   V+ +AC  A+ W  QG   G +AVN+SSR F   +L  ++ +IL  +
Sbjct: 435  AEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILARS 494

Query: 1283 KLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTL 1342
             L A +LELEITE  V++ P+ A++++Q+L  +GV LA+DDFGTGYSSL  LKR  +H L
Sbjct: 495  GLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKL 554

Query: 1343 KIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYI 1402
            KID+ FV  +     D  +  S+I +AHN+GL VV EG+E   Q   L A  C+  QGY 
Sbjct: 555  KIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYG 614

Query: 1403 YSKAVP 1408
            +++  P
Sbjct: 615  FARPQP 620