Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1278 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score =  403 bits (1035), Expect = e-116
 Identities = 216/571 (37%), Positives = 336/571 (58%), Gaps = 11/571 (1%)

Query: 860  GTIKNINNFKQAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGT 919
            G  ++I+  ++AE+ LR+     E+ +  + I D     V+ NEA   +   +    +  
Sbjct: 702  GVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQ 761

Query: 920  QLQFSCYPDAYSEQVRIILRQ---QGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSH 976
                         ++R ILRQ   QG W  E+  +R +   +   + + A+ D++G L+ 
Sbjct: 762  LPGMLTVESEQETRLRHILRQLNGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLAS 821

Query: 977  FVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRS----NLQVSLNNLVKKDTHHTLMVLD 1032
            +V  FSDIS RK  E+ + +L   D LT LPNR+     L  +L +  ++     LM LD
Sbjct: 822  YVCFFSDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLD 881

Query: 1033 LDNFKKINDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPD----IG 1088
            LD FK INDSLGH  GD +LQ ++ R+ A +    ++ R+GGDEF +LL+ D      + 
Sbjct: 882  LDRFKPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALN 941

Query: 1089 SAAAIAKGLVDAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAG 1148
             A  +A+ ++ + + PF L G +  V  SIGI L P+D +    L++ AD AMYHAK  G
Sbjct: 942  RAIHVAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERG 1001

Query: 1149 GNRYQFYSESLNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNH 1208
             N +QFY   +N  AL +LE+E+ +R  L    F ++YQP+      R+ G EAL+R  H
Sbjct: 1002 KNNFQFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRH 1061

Query: 1209 PTQGLIPPSEFIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFAL 1268
            P +GL+PP++FIP+ EE GL+VE+GD V+ +AC   + W +  +   +V+VN+S+RQF+ 
Sbjct: 1062 PRRGLVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVPKVSVNISARQFSD 1121

Query: 1269 TDLQQRIESILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGY 1328
              L +RI  IL    L  A LELE+TE  ++++  +A++++  L  +G+S+A+DDFGTGY
Sbjct: 1122 GQLGKRIAHILEQAGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGY 1181

Query: 1329 SSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLN 1388
            SSL+YLK+FPI  LKID+ FVD +   ++D ++  +II +AH++ L+V+ EGVE   QL 
Sbjct: 1182 SSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLE 1241

Query: 1389 ILRALKCEEVQGYIYSKAVPEAEFTTLLKQD 1419
             LR   C+EVQGY++ + +P A+F      D
Sbjct: 1242 FLREHDCDEVQGYLFGRPMPPAQFEAQFSND 1272



 Score = 42.4 bits (98), Expect = 3e-07
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 22/228 (9%)

Query: 790 HRSGKDDEESNIHPQDQERVREA-LNRHFYGETDHFEAAYRVKGKDGHWVWILDRAKIVE 848
           H  G+   E  +HP D    ++  L +  +G  +  ++  R + ++ +W     R + + 
Sbjct: 491 HAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQALA 550

Query: 849 RDDSENALRMTGTIKNIN-------NFKQAEEQLRLFERAIENI---SEGMFILDHEFRF 898
            D  +   R+ G  K+I        + + +E++ R+   +I ++   ++G   +++    
Sbjct: 551 WDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPS 610

Query: 899 VE--VNEACCDICLMDKDSFIGTQLQFSCYPDAYSEQVRIILRQQ--GRWSAEVESR--- 951
           VE  +  +   I      + I    Q   +    S   +++ + Q   R   EV +R   
Sbjct: 611 VERALGYSAEWIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFL 670

Query: 952 ----RGDNSTFLMELTVDAIYDEQGTLSHFVGVFSDISRRKQQEEELR 995
               R D     +EL V  ++ E G      GV  DIS++++ E++LR
Sbjct: 671 FDCLRADGRKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLR 718