Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1452 bits (3759), Expect = 0.0
 Identities = 773/1399 (55%), Positives = 1015/1399 (72%), Gaps = 28/1399 (2%)

Query: 34   SLIHLNADAFSTVQGLSQNTVTSVVEDKNGYIWLGTLNGLNRFDGSEFKKYYSEDF-SNL 92
            S I LN++ F   QGLSQ TVTS+V+D +GY+W+GT NGLNRFDGS FK ++++   S L
Sbjct: 34   SSIVLNSNLFGVPQGLSQGTVTSIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGTNSGL 93

Query: 93   SSAFIHSLEIFDEKLI-IGTDNSLLAMDPDTE---KLKLILESKEAITFLKKENNNLLLG 148
             S+FI SL+I    ++ +GTDN L   D + +   K    L++   I  +      L++G
Sbjct: 94   PSSFIRSLQIDKNGILYVGTDNGLAVYDKNNDSFIKYGAPLDNTP-IWSINTTIETLIVG 152

Query: 149  SSNSIKVLDSDYNIIFEIKSNKIDFVKQIVKNDEHYLIRNHDGTILKTKNSEKDVEYITR 208
            ++N+I  +    N + ++ S  I  +K+ +K  + Y ++++ G + K  N E  +  I  
Sbjct: 153  TNNAIIDIHGKENHL-DLSSKGIGEIKKSIKIGDDYFLKDYSGKLFKI-NQESSI-LIKE 209

Query: 209  ESISIGFDGVK-LVIDKPDGIYEYTRNNELI-KISNTVYDNVTYIESGKISLKKNIVTIT 266
              I I     K L+I   DG++EY  +  LI +I N  +  +    +    + +N +   
Sbjct: 210  NIIDIEQKNNKSLIISTKDGLFEY--DGVLINRIDNRSFSQLAKNNNTIYGISENYIIDI 267

Query: 267  ENKIEISGEIDSTFSLLSPLIFRVKNGII-IASMNNGFLYIQDHKNIVKTGSAQKNNNIW 325
             NK  I   + S F+     +F   N    + S++ GF  I+   N+VK  S   N+  W
Sbjct: 268  NNKKTIG--LISAFNPDKTTVFYANNNFFTLGSVDQGFFIIKKQNNLVKKTSLTTNST-W 324

Query: 326  FIENHNENLFVADETANIKIYSKEQLELVGEVDTKAIGFKAISIINDDELIYCSTYGIFK 385
             +  +++   V+ E   I +++ E  + + + +T   G+K  ++++ ++L+Y ++ G+F 
Sbjct: 325  HLSKNSQGFLVSSEAEKITLFNNE-FKKIRDYNTYTTGYK-YALLHKNQLLYGTSNGLFL 382

Query: 386  HNLSNKTQIKISDRIAYALAYNENSNKIYIGTNDLKLVSIDLNSFEEIILNSSNLPIFQL 445
             N SN  + K+S+    AL+ NE+ + +  GT D K++ I  +   +        PIF +
Sbjct: 383  DN-SNSVK-KLSNETISALSSNEDDSILSAGTPDGKILIIKNSEIIKTFNTERKEPIFDI 440

Query: 446  KISPKGGDLYISHQGGLSVIRNNEAAIKDIISEHIVYGIEFFDTYIAVATNSGILKHEIS 505
            +   +    YI+ QGGL    N +   + +ISE + Y I+    Y+   T+  +++++I+
Sbjct: 441  ETISENL-FYIASQGGLRKYDNGQ---ETLISEQLTYSIQKDRNYLLFGTSKALMRYDIT 496

Query: 506  SNKTETLVNMDKPVYSLGAYDGWIFGSSINSIVVAAQ--ERVYTLYSSNGAQAEYNNQSF 563
            + K +TL + +K +YS+ +   +I  SS+  +++  +  +  Y L +SNG+Q EYN+ S 
Sbjct: 497  NEKIDTLFSKNKEIYSIASDTNFITVSSLGEVIIFDKNSKTSYALGTSNGSQYEYNSPSA 556

Query: 564  GTFANGVILGGIQGLSIFNKKDFQNFMMKVPERLNTNLTGLYLFNKEVKNDSEIMKKSIN 623
                + ++L GI G+S+ + ++  +++ K  +   T ++   +FN   + + + +KK I+
Sbjct: 557  IKINDFILLAGINGVSLVSPQEISDYI-KSQKANKTEISKFSVFNMSQEKNGKYLKKPID 615

Query: 624  SSESITLKYSDYPFAIQFSSPLYSNSNVTHYYRLKGLSDEWIAAQKTKIATYTNLSAGKY 683
             ++ ITLKYSDYPF+  F SP+   S+  +YYR+ GLSD WI +  T  ATYTNLS G+Y
Sbjct: 616  VTKEITLKYSDYPFSFDFISPMSDESSTNYYYRMLGLSDTWIYSNGTNSATYTNLSPGEY 675

Query: 684  NFEVYAKDNLSQLSGPIKSVSVIVTPPWWMSLEAKLAYALIFLLITSGIIKAALRRREVQ 743
             F+VY  +NLS      + V+VI+TPPWW S +AK+ Y LI + ++  I KA LR+RE+Q
Sbjct: 676  VFQVYTINNLSGEKSSEREVNVIITPPWWSSTQAKIFYFLITMFLSLFIFKAILRKREIQ 735

Query: 744  RQIAISEERLKLSLWGSGDEMWDWDIETGKIYRSNIWGSLEFPKDGHRSGKDDEESNIHP 803
            RQIA+SEERLKLSLWGSGDEMWDWDIETG I+RSNIWG+LEFP+DGHRSG  DEESNIHP
Sbjct: 736  RQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGALEFPRDGHRSGNRDEESNIHP 795

Query: 804  QDQERVREALNRHFYGETDHFEAAYRVKGKDGHWVWILDRAKIVERDDSENALRMTGTIK 863
             DQERVREALN+HFYGETDHFEAAYRVKGKD  W+WILDRAKIVERDD +NALRMTGTIK
Sbjct: 796  MDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWILDRAKIVERDDKDNALRMTGTIK 855

Query: 864  NINNFKQAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQLQF 923
            NI+ FKQ EEQLRLFE+AIENISEGMFILD E+RFVEVNEACC I   ++  FIG  L F
Sbjct: 856  NISQFKQKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIGNLLTF 915

Query: 924  SCYPDAYSEQVRIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSD 983
              YP+++S Q+R +L+QQGRW++EVE+ RGDNS F MELT+DAIYDE G LSH+VGVFSD
Sbjct: 916  ELYPESFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSD 975

Query: 984  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHHTLMVLDLDNFKKINDSL 1043
            ISRRKQQEEELRKLTNNDLLTGLPNRSNLQV+L NLV K+ +H LMVLDLDNFK+INDSL
Sbjct: 976  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINHALMVLDLDNFKRINDSL 1035

Query: 1044 GHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAFVA 1103
            GHQVGD+LL+LVS R+ +++P +T++YRLGGDEFA++LDK  DI ++AAIA  +VDAF  
Sbjct: 1036 GHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNT 1095

Query: 1104 PFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNA 1163
             +E+  E+LV+GVS+GIVLYP+DEQNEQALLRKADIAMYHAKSAGGN YQFYSESLN +A
Sbjct: 1096 VYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHA 1155

Query: 1164 LRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSEFIPLA 1223
            ++QLE ENLIR+GL++DLFEVYYQPKVDL++  +AGMEALVRLNHPT GLIPP++FIPLA
Sbjct: 1156 IKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLA 1215

Query: 1224 EETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLTK 1283
            EE GLIVEIG++V+RKACFAAQ+WREQGLF GRVAVNLSSRQFAL DLQQRIESILRLT+
Sbjct: 1216 EENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQ 1275

Query: 1284 LPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLK 1343
            LPA++LELEITEGTVIKQPE AI VMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLK
Sbjct: 1276 LPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLK 1335

Query: 1344 IDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYIY 1403
            IDKAFVDDIDKSDRDLKMVDSIITIAHNMGL+VVGEGVE  +QLNILRAL CEE+QGYI+
Sbjct: 1336 IDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIF 1395

Query: 1404 SKAVPEAEFTTLLKQDMGE 1422
            SKA+ EAEFT LL++D  +
Sbjct: 1396 SKAINEAEFTLLLQEDQAK 1414