Pairwise Alignments

Query, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1487 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  460 bits (1183), Expect = e-133
 Identities = 279/789 (35%), Positives = 428/789 (54%), Gaps = 26/789 (3%)

Query: 648  NSNVTHYYRLK--GLSDEWIAAQKTKIATYTNLSAGKYNFEVYAKDNLSQLSGPIKSVSV 705
            +S +   YRL+  G  D ++  Q         L+AG+Y  E+ ++ N      P  +   
Sbjct: 701  DSPIQFKYRLRYQGEEDNYVLLQGESQINLAGLAAGEYGLEILSQVNGIWSDKPF-AYPF 759

Query: 706  IVTPPWWMSLEAKLAYALIFLLITSGIIKAALRRREVQ------RQIAISEERLKLSLWG 759
             V   WW++   K    LIF +I   +  A  R+R+V+      + +  S++RL+ SL G
Sbjct: 760  YVEQHWWLTQGFKGILLLIFSIIALSL--AWYRQRQVRTFMTMNQALTESDDRLRQSLRG 817

Query: 760  SGDEMWDWDIETGKIYRSNIWGSLEFPKDGHRSGK---DDEESNIHPQDQERVREALNRH 816
            S  ++W+W  +T   Y  N    L     G+ + +     E   +HP+D+++     N  
Sbjct: 818  SDSDLWEWHRDTQSFYLDNRGAVL-----GNHANEIVVTLETLPVHPEDRDKALGQWNSM 872

Query: 817  FYGETDHFEAAYRVKGKDGHWVWILDRAKIVERDDSENAL-RMTGTIKNINNFKQAEEQL 875
              GE D FEA YR + + G+W W+  R + V R+ + + + R+ G   +I   +Q E+++
Sbjct: 873  LAGEIDRFEAEYRYQRRSGNWGWLRVRGRPVSRNRTTHEIERVAGIYSDITLQRQLEDEI 932

Query: 876  RLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQL-QFSCYPDAYSEQV 934
             L  +A EN SEG+ ILD +      N A   I   ++   +G    QF    D  S +V
Sbjct: 933  NLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHDLVGQSFSQFVQMKDGLSTEV 992

Query: 935  RIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSDISRRKQQEEEL 994
              +L Q   W+ E E    +     + L V  +     +  H+V VFSDI+ RK+ E +L
Sbjct: 993  HQLLGQDSSWTGERELVGQNGLVCPVWLNVSVMQSASDSSVHYVIVFSDITERKRTEADL 1052

Query: 995  RKLTNNDLLTGLPNRS----NLQVSLNNLVKKDTHHTLMVLDLDNFKKINDSLGHQVGDE 1050
            R+L N D+LTGLPNRS     L  S+    +      L+ LDLD FK +NDS GH +GD 
Sbjct: 1053 RRLANYDVLTGLPNRSLFSSRLLQSIQTAQQTGEKLALLFLDLDRFKHVNDSYGHSMGDA 1112

Query: 1051 LLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAFVAPFELAGE 1110
            LL   S R+ + +     L R GGDEF +LL    ++     IA+ L+   VAPF+L G 
Sbjct: 1113 LLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAERLLAQIVAPFKLFGR 1172

Query: 1111 KLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNALRQLEVE 1170
            +  +  SIGI ++P+D    +A ++ AD+AMYHAK  G   +++YS   N  AL  L +E
Sbjct: 1173 EFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYYSSERNAQALYHLRLE 1232

Query: 1171 NLIRDGLRDDLFEVYYQPKVD-LRNSRMAGMEALVRLNHPTQGLIPPSEFIPLAEETGLI 1229
              +R  +  + FE+YYQP++D LR  +  GMEAL+R  HP +G I P  FI +AE  GL+
Sbjct: 1233 ADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYIRPDIFIKVAEACGLV 1292

Query: 1230 VEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLTKLPAANL 1289
            VEI   V R+AC    +W ++     +++VN+S+  F   D  + ++ IL  T++P ++L
Sbjct: 1293 VEIDRWVFRRACLDGAKWVKRCAAPFKLSVNISAVHFRQPDFIEGLKKILADTQMPTSSL 1352

Query: 1290 ELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFV 1349
             LEITEG ++K+ + A   + QL ++G+ +A+DDFGTGYSSL+YL+ F ++TLKID++F+
Sbjct: 1353 GLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAYLRHFDVNTLKIDRSFL 1412

Query: 1350 DDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYIYSKAVPE 1409
             DI  +  D  +V SII +A N+ LTVV EGVE   QL  + +  C  VQGY ++K +  
Sbjct: 1413 IDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSRGCYIVQGYYFAKPMSV 1472

Query: 1410 AEFTTLLKQ 1418
             EF   L Q
Sbjct: 1473 TEFERYLLQ 1481



 Score = 28.5 bits (62), Expect = 0.005
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 53  TVTSVVEDKNGYIWLGTLNGLNRFDGSEFKKYYSEDFSNLSSAFI--HSLEIFDEKLIIG 110
           ++  ++ED    IW+ T  G+ R +    + +   +  + S+A +  H+ EI+       
Sbjct: 218 SILDMLEDSKQRIWIATSRGVYRLEPKTLQIFPVPELPDWSTAMVEGHNGEIW-----FS 272

Query: 111 TDNSLLAMDPDTE---------KLKLILESKEAITFLKKENNNLLL--GSSNSIKVLDSD 159
           +   LL   PDT          K +  +E+ +AI F   +N  L+   GS + + +L S 
Sbjct: 273 SRAGLLKWSPDTHQIENYQQELKTQANMETLKAILF---DNAGLMWVGGSGDGLALLASQ 329

Query: 160 YNIIFE 165
            + I +
Sbjct: 330 PDFILD 335