Pairwise Alignments

Query, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella amazonensis SB2B

Subject, 277 a.a., tRNA pseudouridine synthase A (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  143 bits (360), Expect = 4e-39
 Identities = 94/275 (34%), Positives = 128/275 (46%), Gaps = 33/275 (12%)

Query: 2   RIALGIEYDGSKFYGWQRQAEVN-----SVQAELERALSIVANEPIEVQCAGRTDAGVHA 56
           R+AL + Y G++  GWQ QA  +     +VQ ELER    +   P+ +  AGRTD+GVHA
Sbjct: 3   RLALTVSYVGTRLAGWQIQARTDRPQPRTVQGELERIAERIVGAPVRLHGAGRTDSGVHA 62

Query: 57  TGQVVHFDTNAVRKEGAWTLGVNVHLPDDIAVRWAMPVNDDFHARFSATARRYRYVIFNH 116
             QV H D    R +  W    N  LPDDI+V   + V D+FHARF A  + Y Y ++  
Sbjct: 63  EAQVAHMDVPDHRADLDWQRAFNAGLPDDISVAAVVRVPDEFHARFDARGKTYTYRLWPE 122

Query: 117 NFRPGILRKGVSHYHGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKVSVSR 176
                      +   G +D++ M  AA  L G  DF SF+  G    T  R V +V+   
Sbjct: 123 RRWVPPRLAPFAWATGQLDMDAMDAAAAYLHGMHDFASFQNTGTDIVTTVRTVTRVARRH 182

Query: 177 HG----------------------------MYIVVDIQANAFLHHMVRNIVGSLLEIGLG 208
            G                              +  D +A+ FL  MVRN++G L+ +G G
Sbjct: 183 EGEAPVQPALPGAQPLAGAEETANAMAGGLRVMAWDFEADGFLKQMVRNMMGLLVAVGRG 242

Query: 209 NQPLDWMATLLEAKDRSQAAATAKPHGLYLVDVTY 243
             P D +  +L A+DR  A ATA  HGL L  V Y
Sbjct: 243 KLPPDAVPAILAARDRKTAPATAPAHGLTLTRVHY 277