Pairwise Alignments

Query, 588 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella amazonensis SB2B

Subject, 1167 a.a., type I restriction enzyme EcoKI subunit R (RefSeq) from Shewanella sp. ANA-3

 Score = 74.7 bits (182), Expect = 2e-17
 Identities = 104/415 (25%), Positives = 168/415 (40%), Gaps = 90/415 (21%)

Query: 6   RRQPTMTIKLRDYQQDAIEATLAHFRTSRESALLVLPTGAGKS-LVIAELARLAKG---- 60
           +++P   +KLRDYQ  AIEA  +    +  SALL + TG GK+  +I  + R  K     
Sbjct: 436 QQEPFGYLKLRDYQIKAIEAVESVLSQNVRSALLAMATGTGKTRTIIGLIYRFLKAERFK 495

Query: 61  RVLVLTHVKEL--VAQNAQKVDALAGNASIFS----AGLGEKDSGGKT--VVAGIQSAAV 112
           RVL L     L   AQN  K  +L  N S+      A LG+  +  +T   V+ +Q+   
Sbjct: 496 RVLFLVDRFALGDQAQNDFKEVSLEQNLSLSGIYNIAELGDMAAEAETRIQVSTVQAMVK 555

Query: 113 NVAAFDEP-----FSLVIIDECHR-VSLDEN---------------SQYRQVFSQLREKN 151
            V   D P     F  +I+DE HR  +LD+                S YR+V        
Sbjct: 556 RVFMSDNPPPLDQFDCIIVDEAHRGYTLDQEMTEGEIATRDAAQYLSSYRRVLDYF---- 611

Query: 152 PDLLLLGLTATPYRLGEGAIYKRHVRGHVGNPDKGVFDVCIFELPIRSLIKQGYLTE--- 208
            D + + LTATP          +H     G P        ++    R  + + +L +   
Sbjct: 612 -DAVKIALTATP---------AKHTSEIFGKP--------VYTYSYREAVAEDWLIDHEP 653

Query: 209 PLLLDGLAAQYNFAALKA-------SEDADYQEAEVQAILDTSTRATTTIM---GQLKAL 258
           P+  + L  Q   +  K        ++  + + AE++  L+    A    +      K +
Sbjct: 654 PIRYETLLTQNGISFTKGETVSAINTQTGEIESAELEDELNFEVEAFNRCVINENFNKVI 713

Query: 259 AQQRL---------GVIIFAATVRHAKEIMALLDES-----------AALITADTPGPER 298
            +Q +           +IF AT  HA  +  LLD++           AA+        + 
Sbjct: 714 CEQLVQELDPFGDEKTLIFCATDLHADMVKRLLDDAFKAIYNGEYNQAAVAKITGQSDKV 773

Query: 299 DNIITAFKAQEL-KFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLR 352
           + +I  +K +      + V +LTTG D P +  +  +R   S  L++QM+GR  R
Sbjct: 774 NQLIKQYKNERYPNIAITVDLLTTGIDVPKICNLVFMRRVKSRILYEQMIGRATR 828