Pairwise Alignments

Query, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

Subject, 1011 a.a., error-prone DNA polymerase from Rhodanobacter denitrificans MT42

 Score =  900 bits (2326), Expect = 0.0
 Identities = 517/1024 (50%), Positives = 656/1024 (64%), Gaps = 36/1024 (3%)

Query: 1    MYAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISL 60
            MYAELH +SN SFLRG +    L   AA LGY A+AITDECS+AG+++A  A+   G+ L
Sbjct: 1    MYAELHCLSNLSFLRGVASARALFDRAAALGYKALAITDECSLAGIIRALEASRATGVPL 60

Query: 61   IVGSEFRLQQGT-FVLLATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLPDCVLL 119
            IVGSE +L+ G   VLLA+ R GY  LCR+I+  R RA KG Y    ++++      + L
Sbjct: 61   IVGSELKLEDGARLVLLASDRTGYTNLCRIITAARGRAAKGSYAARWEEVIRNQEGLLAL 120

Query: 120  W-----RPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQR 174
                     +P    T  A    H F  +  LA +L   +G R +     L A G     
Sbjct: 121  LCGADHHGHVPAGAAT-WAGRLAHAFHGRAWLAVELH--RGDRDVETLAALHAIGDA--- 174

Query: 175  YLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRPL 234
                 SGL   P VAAGDV M + +++ L D +T IRLG  +  A G L  N E +LR  
Sbjct: 175  -----SGL---PLVAAGDVHMATRSQRALQDTVTAIRLGKSVTAAAGELFPNGERHLRAP 226

Query: 235  GSIHRRYPQEWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAKGARRRY 294
              +   YP   IA T +IA++CR  +  L    P + VPAG + + +L   VA+GA RR+
Sbjct: 227  TDLAALYPPALIAETLRIAARCRLDLGTLGCRPPLDSVPAGVAPAAWLRALVAEGAARRW 286

Query: 295  GLAVPAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFARRKRILHQGRGSAANSVVCFCL 354
               VPA    Q   EL LI +L YE FFLT++DIV FAR ++IL QGRGSAANSVVC+ L
Sbjct: 287  PNGVPAPQAAQIDHELALIADLGYEAFFLTVHDIVAFARSRQILCQGRGSAANSVVCYAL 346

Query: 355  GITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYRKYGRHRAALAASVI 414
            GITEVDP R ++LFERF+SKERHEPPDIDVDFEHERREEVIQ+IY +YGR RAAL A++ 
Sbjct: 347  GITEVDPERGHLLFERFLSKERHEPPDIDVDFEHERREEVIQFIYARYGRDRAALTAAIT 406

Query: 415  TYRLKSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQLA-----AQLPSADMFGYL 469
            TYR +SA+ +VG+ L LD +L+ RL + +D    +     +LA        P+      L
Sbjct: 407  TYRPRSAVRDVGRALDLDPDLIDRLARAMDGWGDAATMPTRLAETGIDTDTPAMRRLLVL 466

Query: 470  VQSLLGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVIQWDKDDLEALGLLKVDVL 529
               L+G PRHLSQHVGGFVISA PLAELVPVE A ME RT+IQ+DK+DLE LGLLKVD+L
Sbjct: 467  AMQLVGTPRHLSQHVGGFVISAAPLAELVPVEPATMEGRTIIQFDKNDLETLGLLKVDIL 526

Query: 530  ALGMLTAIRKCFELISRHQQ-PFGMRSIKAEDPNVYRMLSRGDSMGVFQVESRAQTSMLP 588
            ALGML+A+R+ F+LI RH      M  I AEDP  Y ML R D++GVFQVESRAQ +MLP
Sbjct: 527  ALGMLSALRRTFDLIRRHHGVSLSMADIPAEDPATYAMLRRADTVGVFQVESRAQMAMLP 586

Query: 589  RLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLEAVTYPSEAVKAVLERTMGVPIF 648
            R+RP C+YDLV+Q AI+RPGPIQG MVHP+LRRR+G EA +YPSEAVK VLERT+GVPIF
Sbjct: 587  RMRPQCFYDLVVQTAIIRPGPIQGGMVHPYLRRRQGREAPSYPSEAVKGVLERTLGVPIF 646

Query: 649  QEQVIKLAMVAAGFSGGEADALRRAMASWKHTGKLWSFEQKLLDGMAARGYSEDFARQIF 708
            QEQV++LA+VAAGF+ GEAD LRR+M +W+  G L  F  +LL GM  RGY+E FA Q+F
Sbjct: 647  QEQVMQLAVVAAGFTPGEADQLRRSMGAWERHGTLEHFRTRLLTGMTERGYTEGFAEQVF 706

Query: 709  RQIQGFGEYGFPESHSASFALLAYVSAYLKLYHPAAFCCALLNSQPMGFYSPSQLLQDVR 768
              I+GFG YGFPESH+ASFAL+AY SAYLK ++P+AF  ALLN+QP+GFY+ SQLLQ  R
Sbjct: 707  EMIRGFGAYGFPESHAASFALIAYASAYLKAHYPSAFLAALLNAQPLGFYTRSQLLQAAR 766

Query: 769  RHGVEVFDVCINHSQWDSSLVKTATGFAIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLS 828
            R G+      +  S W++ L       AIRLG R++ G +  +  RL+  R  A F  +S
Sbjct: 767  RDGIATRPPDVLVSGWETQLEGNGPRAAIRLGLREISGFRADSAARLLRARREAPFRDVS 826

Query: 829  EIS--MLLDRHALELLAAADAFRLLSGHRFQSRWQLSARQASLPLFDDLPEPLKPVGTEP 886
            +++    LD+  L LLA A A   L+GHR  +RW  S  +A+LPLF    E         
Sbjct: 827  DLARRAALDQRDLPLLADAGALGGLAGHRHVARWVTSGIEATLPLFGGTAE------ASV 880

Query: 887  SLDAPNAVQCLKADYRSKGLSLGQHPMALLRIAGLLGKSL-TAKALENTRHGQLVTVAGV 945
            +L AP A + + ADY S GLS   HPMAL R A L G  L T        H + + VAG+
Sbjct: 881  TLRAPTAGEEMAADYASMGLSPASHPMALFR-ASLSGAGLATLAEAARAGHRRRLRVAGI 939

Query: 946  VTGRQRPGTASGVTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHADGVT 1005
            +  RQ P  A GVTF+TLEDET   N++VW   A   R    +S  + + G +EH DGVT
Sbjct: 940  IGMRQSPPAAGGVTFLTLEDETAWLNVVVWPDVAERCRLVLRSSAAVAIDGRIEHVDGVT 999

Query: 1006 HVVA 1009
            H++A
Sbjct: 1000 HLIA 1003