Pairwise Alignments

Query, 759 a.a., acyl-CoA dehydrogenase (RefSeq) from Shewanella amazonensis SB2B

Subject, 815 a.a., oxidoreductase, acyl-CoA dehydrogenase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  752 bits (1941), Expect = 0.0
 Identities = 389/757 (51%), Positives = 507/757 (66%), Gaps = 14/757 (1%)

Query: 4   LLLLIIAAVIVLFAVKDLRMKFITQPVFAFFKRVLPPLSDTEREAMEAGDVWWEGELFRG 63
           ++ L+IA  + + A    R   I++P+   ++ ++P +S TE+EA+EAG  WWE +LF G
Sbjct: 50  IIFLVIALPLNISA---FRQNVISRPLMKVYRGIMPEMSSTEKEAIEAGTTWWEADLFAG 106

Query: 64  KPNWEALHAYGKPTLSAEEKEFLDNQVMTALSMIDDFDIVHNRKDLPPELWDYFKKEGFF 123
            PNW+ LH Y    LSA+E+ FLD  V     M++   + H   DLP E+W Y K  GFF
Sbjct: 107 NPNWKKLHNYPVARLSADEQAFLDGPVEEVCRMVNQHQVSHQLADLPAEVWQYLKDHGFF 166

Query: 124 ALIIPKKYGGKGFSAYANSTIVAKLASRSVSAAVTVMVPNSLGPGELLTHYGTKEQKDFW 183
           A+II KKYGG  +SAYA S ++ KLA  S   A TV VPNSLGPGELL HYGT EQ++++
Sbjct: 167 AMIIKKKYGGLEYSAYAQSRVLQKLAGLSSELASTVGVPNSLGPGELLQHYGTPEQQNYY 226

Query: 184 LPSLAKGEEIPCFALTGPEAGSDAGAIPDVGVVKNGEFNGNEVLGVELTWNKRYITLAPV 243
           LP LAKG E+PCFALT PEAGSDAG+IPD G+V  G++ G EVLG++LTWNKRYITLAPV
Sbjct: 227 LPRLAKGLEVPCFALTSPEAGSDAGSIPDFGIVCKGQWEGEEVLGMKLTWNKRYITLAPV 286

Query: 244 ATVLGLAFQMKDPDGLLGDKKHIGITCALIPTSHPGVEIGNRHNPLNMAFMNGTTRGDKV 303
           ATVLGLAF+++DPD LLGDK+ +GITCALIPT   GVE G RH PLN  F NG TRG  V
Sbjct: 287 ATVLGLAFKLRDPDHLLGDKEELGITCALIPTDVEGVETGRRHFPLNCMFQNGPTRGKDV 346

Query: 304 FIPLDWIIGGPQYAGKGWRMLVECLSAGRGISLPALATASGHVTTKTTTAYSYVRKQFGM 363
           F+PL +IIGGP+ AG+GWRMLVECLS GRGI+LP+ +          T AY+ +R+QF +
Sbjct: 347 FVPLSFIIGGPKMAGQGWRMLVECLSVGRGITLPSNSAGGVKTAALATGAYARIRRQFKL 406

Query: 364 SIGHFEGVQEALARIIGNTYQLEAARRLTTTGIDLKVKPSVVTAIAKYHMTEMGRAVMDD 423
            IG  EG++E +ARI GN Y ++A   LTTTGIDL  KPSV++AI KYH+T+  +  + D
Sbjct: 407 PIGKLEGIEEPMARIGGNAYLMDAVTSLTTTGIDLGEKPSVISAIVKYHLTDRMQKCVID 466

Query: 424 AMDIQSGKGIQLGPKNYLGHAYMANPISITVEGANILTRSLMIFGQGATRCHPYVLAEME 483
           AMDI  GKG+ LGP NYLG  Y A PI+ITVEGANILTRS++I+GQGA RCHPYVL EME
Sbjct: 467 AMDIHGGKGVCLGPNNYLGRGYQAAPIAITVEGANILTRSMIIYGQGAIRCHPYVLPEME 526

Query: 484 AAGMEDIDAALERFDDLLLGHMGYATRNALSSLFSALTASRFAQSPVSGDTKRYYQHMGR 543
           +A        L  FD  + GH+G+AT N + S +  LT+SRF+ +P S  TKRYYQHM R
Sbjct: 527 SAFDTQSGQGLANFDAAIFGHIGFATSNFVRSFWLGLTSSRFSNAPYSDKTKRYYQHMNR 586

Query: 544 MSAALAIMTDMAMLILGGELKRREMLSARLGDVLSELYLASATLKLFEDNGRQHDDLPTV 603
            SA LA+++D+AM  LGG LKR+E +SARLGD+LS+LYLASATLK ++D GRQ DDLP V
Sbjct: 587 FSANLALLSDLAMATLGGNLKRKERISARLGDLLSQLYLASATLKRYQDEGRQTDDLPLV 646

Query: 604 HYVMQTRLMKAAKALEDALRNFPLRPVGWLLRALVFPLGNHFKGPSDKLATQVVEAMLKP 663
            + ++  L K   +L+D L NFP+  +G +LR ++FP G   K PSD L  +V + M  P
Sbjct: 647 QWAVEDALYKLQASLDDLLDNFPM-GLGGVLRTIMFPFGRPLKRPSDVLDHKVAKIMQTP 705

Query: 664 GPARERLTFLCPSFDGDKGGIAEVEEAFLAQYECRSIYKKLRSAQKEGKLKGKGVSAALL 723
             +R+RL        G     +E     + +   + I        K  K  GK +    L
Sbjct: 706 CESRDRLG------KGQFWTNSEHNAVGIQEQTLKDILAAEPLFDKVCKASGKRLPFMWL 759

Query: 724 SQAVEQ----GVISQEEHDKVLKADELRLAAVNVDEF 756
            +   +    GV+S  E   + +A+  R+ ++NVD+F
Sbjct: 760 DKVAAEGKALGVLSDSEVQLLERAEIGRMKSINVDDF 796



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 435 LGPKNYLGHAYMANPISITVEGANILTRSLMIFGQGATRCHPYVLAEMEAAGMEDIDAAL 494
           +GP +++    +A P++I+    N+++R LM   +G       ++ EM +   E I+A  
Sbjct: 44  VGPISWIIFLVIALPLNISAFRQNVISRPLMKVYRG-------IMPEMSSTEKEAIEAGT 96

Query: 495 ERFD-DLLLGHMGYATRNALSSLFSALTASRFAQSPVSGDTKRYYQH 540
             ++ DL  G+  +   +       +     F   PV    +   QH
Sbjct: 97  TWWEADLFAGNPNWKKLHNYPVARLSADEQAFLDGPVEEVCRMVNQH 143