Pairwise Alignments

Query, 544 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella amazonensis SB2B

Subject, 541 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella loihica PV-4

 Score =  812 bits (2098), Expect = 0.0
 Identities = 379/525 (72%), Positives = 434/525 (82%), Gaps = 6/525 (1%)

Query: 6   WWRGAAIYQIYPRSLKDSNGDGIGDLQGIIERLDYIASLNVDAIWISPFFRSPMKDFGYD 65
           WWRGA IYQIYPRSL DSNGDG+GDLQGII +LDYIASLNVDAIWISPFF+SPMKDFGYD
Sbjct: 6   WWRGAVIYQIYPRSLMDSNGDGVGDLQGIISKLDYIASLNVDAIWISPFFKSPMKDFGYD 65

Query: 66  ISDYLDVDPMFGTMDDFDELIAKAHSLGLKVVIDQVLSHTSDEHAWFAESRQSRDNPKAD 125
           ISDY  +DP+FGTM DFDELI KAH LG+KV+IDQVLSHTSD+HAWF+ESRQSRDN K D
Sbjct: 66  ISDYRAIDPLFGTMADFDELIDKAHGLGIKVIIDQVLSHTSDQHAWFSESRQSRDNAKQD 125

Query: 126 WYVWADPREDGTPPNNWLAIFGGCAWEWEPRRQQYYLHNFLKSQPDLNFHCEAVRQAVLN 185
           WYVWADP  DGT PNNWLAIFGGCAWEWEPRRQQYYLHNFL SQPDLNFH   VRQAVL+
Sbjct: 126 WYVWADPNPDGTAPNNWLAIFGGCAWEWEPRRQQYYLHNFLTSQPDLNFHNPDVRQAVLD 185

Query: 186 NVEFWLKKGVDGFRLDAITFCFHDKALRDNPAKPADKRQGRGFSEDNPYAYQYHWYNNER 245
           NV+FWL KGVDGFRLDAITFC+HD+ LRDNP KP DKRQGRGFSEDNPYAYQYH+YNN R
Sbjct: 186 NVKFWLDKGVDGFRLDAITFCYHDEQLRDNPPKPEDKRQGRGFSEDNPYAYQYHYYNNTR 245

Query: 246 PETLGFIEDLRALIDRYPGAVTLGEVSSEDSLATMAEYTRGDNRLHMAYSFELLTKDYSA 305
           P+T+GFIE+LRALI++YPG VTLGEVSSEDSLATMAEYT+GD+RLHMAYSFELLT D+S 
Sbjct: 246 PQTVGFIEELRALINQYPGVVTLGEVSSEDSLATMAEYTQGDDRLHMAYSFELLTDDFSP 305

Query: 306 GYIRSTVEALEGAIGDGWPCWAIGNHDVERVISRWGQGKGTPQMAKMLSAMLGCLRGSLC 365
            YIR TVEALE +IGDGWPCWAIGNHDV+RV +RWG+      MAKML+AML  LRGS+C
Sbjct: 306 AYIRHTVEALEQSIGDGWPCWAIGNHDVQRVATRWGRDAFNSDMAKMLNAMLCSLRGSVC 365

Query: 366 VYQGEELGLTEADIPFDALQDPFGIAFWPNFKGRDGCRTPMPWQAEGEYMGFGATASGAM 425
            YQGEELGL E +I ++ LQDPFGI FWP FKGRDGCRTPMPW+ +  + GF    S   
Sbjct: 366 SYQGEELGLGEVEIAYEQLQDPFGITFWPMFKGRDGCRTPMPWRHDANHAGF----SDNT 421

Query: 426 PWLPLPEEHRALNVAAQSANPDSVLNQFSRFMAWRRTQPALVTGEIKFIDSKEPVLAFER 485
           PWLP+P +H+A+ V  Q ANP+S+LN +   +AWR+  P LVTG+IKFI+S + +L FER
Sbjct: 422 PWLPVPADHKAVAVDVQEANPESILNHYRHMLAWRKLHPILVTGDIKFIESTDALLVFER 481

Query: 486 VSSDKKVLCVFNLSDKPQTMTVP--GSEPWKLLEGHGLEGGSLDG 528
              ++ +L  FNLS +PQ+ ++   G +    LEGHGL    L G
Sbjct: 482 RLGEQTLLVAFNLSGQPQSFSLAGLGDKALSPLEGHGLPKAELKG 526