Pairwise Alignments

Query, 683 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella amazonensis SB2B

Subject, 1121 a.a., alpha-amylase from Herbaspirillum seropedicae SmR1

 Score =  105 bits (261), Expect = 2e-26
 Identities = 111/508 (21%), Positives = 192/508 (37%), Gaps = 103/508 (20%)

Query: 231 GDLAGIEHRLDYLNDLGVTQLWLNPLLENRQPAYSYHGYAITDFYQIDARFGSNAQYQAL 290
           GD AG+  +LDY+  LGV  +WL P   + +      GY I+++  +   +G+ +  +  
Sbjct: 32  GDFAGLIQKLDYITGLGVNTIWLLPFYPSPRRD---DGYDISEYKNVHPDYGNMSDVRRF 88

Query: 291 VRKAADRGLGVIMDVVLNHMGSGHPWMQDL----------PFNDWVNPRSMHTSHRRTAV 340
           +  A + GL VI ++V+NH    HPW Q             F  W +    +   R   V
Sbjct: 89  IAAAHEHGLRVITELVINHTSDQHPWFQRARRARPGSVARNFYVWSDDDKSYADTRIIFV 148

Query: 341 ---QDPYAAPKDAAAFTDGWFVDSMPDLNQRNPHLATYLIQNNLWWIEYAGLSGLRIDTW 397
              +  +     A A+    F    PDLN  NPH+   ++    +W++  G+ GLR+D  
Sbjct: 149 DTEKSNWTWDPVAKAYFWHRFYSHQPDLNFDNPHVLKAVLNVMSFWLD-LGIDGLRLDAV 207

Query: 398 SY------------SDKH-FLKAFSEAIMAEYPHFNMVGEEWSGNPAVVSYWQRAKQNPD 444
            Y             + H  LK     + ++YP   ++ E         + W    Q   
Sbjct: 208 PYLIEREGTSNENLPETHAILKRIRAEMDSKYPDRMLLAE--------ANMWPEDVQQYF 259

Query: 445 GYQTSLPGLMDFPLYEVLLQAVNEEERWG-TGLIRLYEALANDMLYPHAQNLVLFEGNHD 503
           G          FPL   +  A+  ++R+  T ++R    +  D  +       +F  NHD
Sbjct: 260 GDSDECHMAFHFPLMPRMYMALASQDRFPITDILRQTPDIPADCQW------AIFLRNHD 313

Query: 504 -------------------------------TNRLYSLLGRDMNKFKLALAYVLLSNRVP 532
                                            RL  L+ RD  + +L  +++L     P
Sbjct: 314 ELTLEMVTDAERDYLWNHYAPDRRARINLGIRRRLAPLVERDWRRIQLLNSFLLSMPGTP 373

Query: 533 QIFYGTEFAMQSPVEGRNDGAVRADMP-------GFGKA---------------GFSKSD 570
            I+YG E  M   +   +   VR  M        GF +                G+   +
Sbjct: 374 VIYYGDEIGMGDNIHLGDRDGVRTPMQWTPDRNGGFSRVDPARLVLPLLMDPQYGYQTIN 433

Query: 571 IDAMAGDSKTAFEFIRALLHFRKTSDAVHRGKLVHFVPQS-GLYVQLRQAPDDNPDAKNL 629
           ++A + D  +   ++R LL+ RK   A  RG L    P +  ++  LR+  D  P     
Sbjct: 434 VEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIFAYLREFTDPRPGGATE 493

Query: 630 MVI----FNKNKDSVSLDMGHFTDFLPL 653
            ++     +++  +V LD+  F   +P+
Sbjct: 494 TILCVANVSQSAQAVELDLSAFAGRIPI 521