Pairwise Alignments

Query, 393 a.a., topoisomerase IV, subunit B (RefSeq) from Shewanella amazonensis SB2B

Subject, 445 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 38/394 (9%)

Query: 2   RISTVAATIAALMATPAAWAEIQINGFASIVAGSSLDDDESLF---------GYDSEIDF 52
           R+ +    + A+ +  A  A+  ++G+ SI  G S +++E+L           Y     F
Sbjct: 27  RLMSGVVGLLAMTSGAALAADWSVSGYGSI--GYSYENEENLGFLRNIAQPDDYQRNGSF 84

Query: 53  NQNTKFAVQVAADLGGGLRATAQLLSRGRDD--YDVEFEWAYLSYDITDNLMLMAGRQRF 110
             ++   VQ    L      T Q + + R +  +D   E A++ Y   +N  +  GR   
Sbjct: 85  KPDSNIGVQFDLQLDPQWSVTTQWVMKERVEQRFDDITELAFVRYTPDENWDIRLGRLGL 144

Query: 111 NLYKYSDYIDVGFAYHWIMPPQGVY-SLPFSSGEGIGLVYSTLWGDT--DVGVTYKYITS 167
           N Y  +D   + +A+ W+ PPQ  Y  + + + +GI + Y + W +    +G  Y  I  
Sbjct: 145 NAYIAADSRRIDYAHLWLRPPQEFYGGIFYDAIDGIDVTYRSQWDEITWSLGAQYGRIKQ 204

Query: 168 SKEDFVPSGTDITPAPFSAKGHILNLNFTTGDFEYGLNLGYVS----DLTYEYPDLLALA 223
             ++   S    T +        L L F+     +   L YV      +  +   LL + 
Sbjct: 205 KLQNTASSEISATQS-----DQTLALVFSLEQDRWFGRLSYVHVGQLKVDLDGNSLLGIQ 259

Query: 224 AA--VESTGLFP-----EQTVNDILPIDDSATIIGVHGKYDPGNWFILAEYTRLDLDPSA 276
               +   GL P      Q V  I   +++     +   Y    W + +E   +  + + 
Sbjct: 260 VVNQLAQAGLGPISAEAAQLVEQINLQEETIEYWQLGFGYRGEQWSLQSEIYTILGEKAV 319

Query: 277 FALQDSAFVSGGIRFGAVTLHATYG-WDENKPQYEALDAMLPVYNALPPAAQPQVAPLIG 335
                  +   G   G VT +  YG ++     Y+A          L P    Q+A +  
Sbjct: 320 VPEGVGGYAIAGYTLGNVTPYVIYGRFNPKNAPYQAQSDW-----GLSPVNGAQLAEVQK 374

Query: 336 LTQMALETQQQDSYYYTLGMRWDFHSSAAFKVEY 369
                + +   D   ++LG+RWD  +  A K +Y
Sbjct: 375 WLIGGINSTYIDQQTFSLGVRWDVTAQIALKAQY 408