Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1869 a.a., signal peptide protein from Sinorhizobium meliloti 1021

 Score = 65.9 bits (159), Expect = 3e-14
 Identities = 140/706 (19%), Positives = 258/706 (36%), Gaps = 104/706 (14%)

Query: 584  PDLSLLA----EGLNGKFMANLDVSGSNKDPLVNLQAQGEAIKFGT------------TQ 627
            PDL LLA    E ++G    +  +  +N    ++L+A G  IK G               
Sbjct: 1157 PDLGLLAAMAGEKVSGDLSGSAAIRTANGVTSLSLKANGSGIKRGDLTIAKPVADISIAD 1216

Query: 628  LESLAIKGLYQPFAKHEFALSLKGSAL---QLGSR-------KLESVTLGAKGDINKQKL 677
            + +LA++G  +     +    + G  L   Q G R       + +   L AKGD+     
Sbjct: 1217 VAALAVRGSVRAENVAQGQNRVTGPNLTFDQQGGRTGFTVDGRYDGGPLSAKGDMVASGG 1276

Query: 678  RAESFGDIRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGLSQDLHLTWELASNSGTL 737
            R E    +RL +   +      +L   ++   + G+   D            + ++ GT+
Sbjct: 1277 RTE----VRLASFAATPKRIPLKLARPTIVAIENGTVLLD---------ALTIEASKGTI 1323

Query: 738  NEACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVD- 796
              A               + G T D++      P A+I+   PT      + ++   VD 
Sbjct: 1324 TVA--------------GSAGPTLDISARLNALPAALINTFAPT---LGAEGTIAGTVDV 1366

Query: 797  WSPKRKPAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLSPETLT--------ADL 848
                  P     L +   SV   R  G    V    ++AK   +   +T         DL
Sbjct: 1367 GGTAAAPVVVYDLRWSGASVAAARGAG----VSSLEIAAKGRFADNRVTIDATVSGPGDL 1422

Query: 849  NLRSSRLATLDSRVEIAVTPDRALGGYIHLDRIQLEALREFLPQLDTLQGEISSELTLAG 908
            + R      L   + I++   +  G         + A + F     TL G    +L+L+G
Sbjct: 1423 SFRGGGNVELGGNMPISM---KFAGDVPFALLANIMAEQGF-----TLTGSAKVDLSLSG 1474

Query: 909  TLMSPEVSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSL 968
               +P+++G ++ A            ++D+   +A  G+QA+++         G IE S 
Sbjct: 1475 PAKAPQIAGTVSTAGARLVDVRRNLALNDLTANVALDGRQATISRLSANLASGGSIEASG 1534

Query: 969  A---WPDGQFSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKG--------SV 1017
                 P   F   L ++ +    +   +   +++ D+TL        + G        ++
Sbjct: 1535 TVGIVPGSGFPANLRIRLNNATYVDGTLFTANLAGDLTLNGPLVSTPVLGGRLTIRRAAI 1594

Query: 1018 NIP---TGNIKIVQLAEGGVAVSPDVVFDDSIAEAEQKTSPYGVTA-DLNIRVGDQVKIE 1073
             IP     ++  + +           +  D   +    T   G  A DL +    Q  + 
Sbjct: 1595 TIPERLPASLSQIDIKHRNAPPRVRQMTRDLRRDTSAGTEASGAIAFDLAVSSPGQFFVR 1654

Query: 1074 GMGLKGRLDGTLRLQQQAFKPPLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNL 1133
            G G+   L G L ++  A + P++ G   +  G  + +G+ L    G + F G   +P L
Sbjct: 1655 GRGIDAELGGDLTIRGTAVQ-PIVSGGFDMRRGRLEILGKRLTFTDGHIGF-GGDLIPTL 1712

Query: 1134 NIEAIREIKDEDLIAGVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNN 1193
            +++A        +   V + G    P VT  S+P+  Q EIL+ ++  +          N
Sbjct: 1713 DLDATSSAGSTTIT--VNVAGPANNPTVTFSSSPALPQDEILAQLIFNRSL--------N 1762

Query: 1194 ALMMGAALSLSSSLSGGAIGNIGSTATSLVEKFGFSNVQLDTNDEG 1239
             L       L+S++   A G   S    L  K G  ++ + T++ G
Sbjct: 1763 NLSAFQIAQLASAVGQLAGGGSTSLLDGLRNKLGVDDLDITTDESG 1808



 Score = 30.4 bits (67), Expect = 0.002
 Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 37/242 (15%)

Query: 935  ISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSLAWPDGQFSGELAVKGDKLAVIVPPMA 994
            + D+ +L A AGQQAS       GD  G    ++   DG  S  L  +G+     +   A
Sbjct: 678  LPDLGLLAAMAGQQAS-------GDLAG--SATIRTADGVTSLALTARGES----IRRDA 724

Query: 995  LLDVSPDVTLTF-DAAMLDLKGSVNIPTGNIKIVQLAEGGVAVSPDVVFDDSIAEAEQKT 1053
            L    P V +T  + A L +KG V   +      +L +  +A   +         AE + 
Sbjct: 725  LTVAKPVVDVTVANLARLAIKGGVRAESVVQGENRLTDIDIAFEQEAERTGFSVGAEFEG 784

Query: 1054 SPYGVTADLNIRVG-DQVKIEGMGLKGRLDGTLRLQQQAFKPPLLFGDVKVLSGSYKFMG 1112
            +P   T DL  R G  ++ +       R     R+  Q  +P +    + + +G     G
Sbjct: 785  APLAATGDLASRDGRTEISLASASATAR-----RIPLQLARPSV----IAIENGVVHIDG 835

Query: 1113 QTLKIPKGEVQFVGP-----------PQLPNLNIEAIR-EIKDEDLIAG-VRITGTGMAP 1159
             T++   G V   G              LP   I  +   +  E  I G V I G G AP
Sbjct: 836  LTIQASTGTVAVTGTAGETLDISADISDLPATLIHTVAPTLGAEGKITGKVDIAGNGAAP 895

Query: 1160 EV 1161
             V
Sbjct: 896  VV 897