Pairwise Alignments

Query, 1297 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1500 a.a., Protein of unknown function DUF490 (NCBI) from Rhodospirillum rubrum S1H

 Score =  106 bits (265), Expect = 1e-26
 Identities = 136/562 (24%), Positives = 246/562 (43%), Gaps = 56/562 (9%)

Query: 758  GSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVDWSPKR-KPAGELSLVFEPGSV 816
            G      +  R  P A+ D + P   D   +  LD  V  S    +P GE        ++
Sbjct: 954  GGAVKATLDARAIPLALADLVAP---DLGLEGRLDGRVSLSGSASRPTGE-------AAI 1003

Query: 817  TLLRPKGKVVEVGFEALSAKASLSPETLTADLNLRS------SRLATLDSRVEIAVTPDR 870
            TL R K K V      +   A+L   +L   L++           A+L     +A+   +
Sbjct: 1004 TLSRLKTKAVPDRALEVRLDATLGARSLDGTLSVAGFAGQPLRATASLPRGAGLAIDRTK 1063

Query: 871  ALGGYIHLDRIQLEALREFLPQLD-TLQGEISSELTLAGTLMSPEVSGNLALANGAFSAS 929
             L       R  + AL +F P +D  L G    ++ + G++ +P VSG ++L NGA+   
Sbjct: 1064 PLTARADW-RGDVRALMDFTPLIDHRLSGATVIDILVTGSIDAPIVSGGVSLKNGAYENL 1122

Query: 930  ANPTLISDVDMLL-AFAGQQASLN-GSWVMGDGKGGIEGSLAWPD-GQFSGELAVKGDKL 986
            +  T++ ++ + L A  G+  +++  +   G G+  ++G +   D  +  G + +   + 
Sbjct: 1123 STGTVLREIALALRADGGRTVTIDLDARDGGKGRVSLKGRVLLVDLTRPIGRIDLDITQA 1182

Query: 987  AVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGGVAVSP-DVVFDDS 1045
             V+    A+ ++S D+ +   A  + + G+V   TG ++I  +  GG +++  DVV    
Sbjct: 1183 VVVRRDDAVAEISADLAMVLAADQMTVSGTVT--TGPVEIRLVGGGGPSIAELDVVEIGG 1240

Query: 1046 IAEAEQKT--------------SPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQA 1091
              +A   T              +P  V  D+ + +  +V + G G+    +G L +   A
Sbjct: 1241 KGQATSATQAVADREALRMAAQTPIPVLLDITVSLPRRVYVRGRGVDSEWEGKLNVGGTA 1300

Query: 1092 FKPPLLFGDVKVLSGSYKFMGQTLKIPKGEVQF-VGPPQLPNLNIEAIREIKDEDLIAGV 1150
              P ++ G +  L G    +G+T  + KGEV+F  G P  P L++ A  +    +++A V
Sbjct: 1301 AAPKVV-GTITTLRGQADVLGRTFSLRKGEVRFDGGMPIDPLLDVVAAND--TGEVVALV 1357

Query: 1151 RITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAALSLSSSLSGG 1210
             ++GT   P++   S P+  + E++S IL GK      SG+ +A         +S L+G 
Sbjct: 1358 SVSGTASDPQIGFSSEPALPKDEVISQILFGK-----TSGELSAFEAIQLAEAASQLAG- 1411

Query: 1211 AIGNIGSTATSLVEKFGFSNVQLDTNDEGRVAISG--YIGENLM--VKYGVGVFNPGYEM 1266
             +G  G    SL    G   ++L     G   +    Y+ EN+   V+ G+G+ +   E+
Sbjct: 1412 -VGGGGGVIQSLRAMTGLDVLKLGEGATGGTTLEAGTYLRENVYIGVEQGLGLQDSAIEV 1470

Query: 1267 TVRYYLLSQLYLETVSGTVGQS 1288
             V   L   + LE+  G  G S
Sbjct: 1471 QVE--LTPSINLESKVGATGAS 1490



 Score = 28.1 bits (61), Expect = 0.006
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 87  INRDLALSDIRWSMDGIAVEGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKG 146
           I RD+ALSD +    G+ +      V W P  LL   L V+ L  +GLA +     LP  
Sbjct: 83  ILRDVALSDPQ----GVWLTLGRAEVLWSPLALLGGRLSVEALRTEGLA-IARPPALPSS 137

Query: 147 ESEP 150
             +P
Sbjct: 138 PEDP 141



 Score = 28.1 bits (61), Expect = 0.006
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 576 DLQGLILAPDLSLLAEGLNGKFMANLDVSGSNKDPLVNLQAQGEAIKFGTTQLESLAIKG 635
           DL G + A  L+L A          L ++   +D  ++L A G A+        SLAIKG
Sbjct: 404 DLPGAVTAKTLALTATAQPEGAKTALSITVGGED--LSLTAGGPALAAALGPSPSLAIKG 461

Query: 636 LYQPFAKHEFALS---LKGSALQLG 657
           L+    +    LS   L G+A+ LG
Sbjct: 462 LFDA-EESRLTLSDLVLSGAAVGLG 485