Pairwise Alignments

Query, 213 a.a., outer membrane protein W (RefSeq) from Shewanella amazonensis SB2B

Subject, 245 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 30/240 (12%)

Query: 4   SYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADV----------AE 53
           S+L  + A S+++  +A   A  AG  IV  G   + P +SS  +  +          + 
Sbjct: 6   SFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLQPQDSSSGLTKLNGPQAGFFPNST 65

Query: 54  FGVSNNTQLGLNFGYMLTDNWAIELLAATPFTHDVS----LGVLGKIAETKHLPPTLVAQ 109
             VSN   LG+ F +  TDN+A+      P    +     L  LG++ + K   P +VA+
Sbjct: 66  STVSNADTLGIAFTHFFTDNFAVTADLGIPPEFKLKGTGDLQALGELGKAKQWSPAIVAK 125

Query: 110 YYFGNANSAFRPYVGVGVNYTNFFDTEFTNDL-------DGALTDLSLSTSVGWAAQVGF 162
           +YFG A  AFRP+VG GV Y  + D   +           G     +LS+S       G 
Sbjct: 126 WYFGGAQDAFRPFVGAGVTYVWYSDVSLSQAFQNRASLNSGGTATANLSSSWAPVLTGGA 185

Query: 163 DYSFNKNWMLNASVWYADISTDVKF---------NLGDTPVVVETDIDPWVYMVSVGYKF 213
            Y+FN  W  + SV Y  + TD             LG         +DP V  +SVGYKF
Sbjct: 186 TYAFNDRWSASFSVSYIPLKTDADITANPAGAFAGLGPQRYKTTITLDPIVTFLSVGYKF 245