Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1256 bits (3251), Expect = 0.0
 Identities = 652/1155 (56%), Positives = 844/1155 (73%), Gaps = 16/1155 (1%)

Query: 5    TVDRLPKTPA-KGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGY 63
            +V RLP  PA  G+     LPG  A +L +AE   +    TL++T+D+ +A  L+ EL +
Sbjct: 2    SVLRLPPLPAASGKQHWGNLPGA-ALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF 60

Query: 64   LLKPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLP 123
                 G+ +  FPD ETLPYD FSPHQD++SQR+  L  L      +++VP+TT + RL 
Sbjct: 61   FAP--GLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLA 118

Query: 124  PKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASE 183
            PK FL  + L+L  G +  ++QMR  L   GY  V+ VYEHGEFA+RG+++D+FP G+  
Sbjct: 119  PKRFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPL 178

Query: 184  PLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETV 243
            P RI+LFDDE+E++R FDPE QRS  +V+SIR+LPAREFP   +A+ GFR R+R  F+ V
Sbjct: 179  PYRIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFD-V 237

Query: 244  NNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGE 303
            +     +YQ +S  + PAGIE YLPLF+++TATLFDYLPE+ Q+ +   + QAAE    +
Sbjct: 238  DFRRCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSD 297

Query: 304  IHSRYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRI-----DLSGDEGDKTLEAAPL 358
            + +RYE+R+VDP RPLLPP  L+   E+ FAR KL+PR+     D+    G +   A  L
Sbjct: 298  VRNRYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQAL 357

Query: 359  PDIRANHKLKQPLESLANWAQGGQ-RIAFVAESEGRREALLELLGKAGLKPKLFGHLDEF 417
            P++    K  +PL  L  + +    R+ F AES GRRE LLELL +  L+P+      +F
Sbjct: 358  PELAIESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDF 417

Query: 418  LASDSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKN 477
            LASD    + +APL  G QL      +A+V E+ LFG+RV Q RRR+K R   ++V IKN
Sbjct: 418  LASDQRLAITIAPLDEGLQL----DDVALVAESPLFGQRVMQRRRREKSRDGGENV-IKN 472

Query: 478  LAELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFA 537
            L EL+ G PVVH++HGVG YQGL TL+  G   E+L L+YA   KLYVPV++LHLI+R+ 
Sbjct: 473  LTELREGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYT 532

Query: 538  VGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQF 597
              +D  APL+RLG+E+W KAKRKA E++RDVAAELLD+YARR AR G      + +Y  F
Sbjct: 533  GSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETF 592

Query: 598  AQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVV 657
            A GFPFEET DQ+ AI AV +D+   K MDRLVCGDVGFGKTEVAMRAAF+AV  G+QV 
Sbjct: 593  AAGFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVG 652

Query: 658  VLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKL 717
            VLVPTTLLAQQH+ +F+DRFADWPVR+EVMSRF++AKE Q  ++ + EGK+DI+IGTHKL
Sbjct: 653  VLVPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKL 712

Query: 718  LNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 777
            L  ++ F +LGL+IIDEEHRFGVRQKE++KA+R+ VDILTLTATPIPRTLNM+++GMRDL
Sbjct: 713  LQDDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDL 772

Query: 778  SIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELL 837
            SIIATPPA+RL+V+TFV E     ++EA+LRE+LRGGQVYYLHN V+TIEK A D++ L+
Sbjct: 773  SIIATPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALV 832

Query: 838  PEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGL 897
            PEARV   HGQMRER+LE+VMSDFYH+RFNVLV +TIIETGIDVPSANTI+I+RAD FGL
Sbjct: 833  PEARVAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGL 892

Query: 898  AQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIR 957
            AQLHQLRGRVGRSHHQAYAYL+TP  K MT DA+KRLEAI   +DLGAGF+LAT DLEIR
Sbjct: 893  AQLHQLRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIR 952

Query: 958  GAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLP 1017
            GAGELLG+ QSG I  +GF+LYMEMLE AVKA+++G++P+L Q LG   EI+LR+PAL+P
Sbjct: 953  GAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIP 1012

Query: 1018 DDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRL 1077
            +DY+ DV+ RL LYKRIA    E  + E++VE+IDRFGLLP+ T+NL+ +T+ K +A +L
Sbjct: 1013 EDYLPDVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKL 1072

Query: 1078 GATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLE 1137
            G TKI+   +GG IEF  +  VDP  +I L+ SQP+ Y+ +G    +F +P E  +ER  
Sbjct: 1073 GITKIDAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFN 1132

Query: 1138 LLELLLEQLEQHSVG 1152
             LE LLE+L  +  G
Sbjct: 1133 TLEALLERLAPNEQG 1147