Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1167 a.a., Transcription-repair coupling factor from Acidovorax sp. GW101-3H11

 Score =  999 bits (2584), Expect = 0.0
 Identities = 559/1159 (48%), Positives = 739/1159 (63%), Gaps = 27/1159 (2%)

Query: 9    LPKTPAKGRVSAVRLPGGVARALTLA---EMTCSYAGTTLIVTSDTPTALVLEAELGYLL 65
            LPK     R +  R P G A +L LA   E   +   TT IVT+D   A  L  E+ +  
Sbjct: 12   LPKLSPGKRFTLPR-PEGSADSLLLARLAERDKAAGRTTAIVTADATDAQRLIEEMSFFA 70

Query: 66   KPRGIDICLFPDRETLPYDSFSPHQDLISQRLETL---SNLERGKGR-LVIVPLTTLMVR 121
               G+   LFPD ETLPYD+FSPHQDLIS+RL TL   S  ++  G  +V+VP TT + R
Sbjct: 71   P--GLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQKDKDTGADVVLVPATTALYR 128

Query: 122  LPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGA 181
            L P +FLA      K   +    + +  L   GY  V QV   GE+A+RG ++D+FP G+
Sbjct: 129  LAPPSFLAGYTFHFKIKQKLDEAKFKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGS 188

Query: 182  SEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFE 241
              P R++LFD+E++SIR FDP++QRS   V  +R+LP REFP D  A   FR R+R   E
Sbjct: 189  LVPFRVDLFDNEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRSRWREMLE 248

Query: 242  TVNNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHL 301
              +     +Y+ +   +  AGIE YLPLFFD+TAT+FDYL  E  ++  G L  A +   
Sbjct: 249  G-DPTKSRIYKDMGAGVATAGIEYYLPLFFDETATVFDYLGGEATVVLHGDLEPAFQRFW 307

Query: 302  GEIHSRYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDLSG--DEGDKTLEAAPLP 359
             +   R+   Q DP RP LPP+ L+ + ++ + R K + ++ +    ++ D       L 
Sbjct: 308  QDTKDRFRLVQGDPERPALPPEALFLSADQFYTRSKEHAQLSIRPGVEDVDDNPHFHKLG 367

Query: 360  DIRANHKLKQPLESLANWAQGGQ-RIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFL 418
            D+      + PL  L    +  Q R+  +AES+GRRE+LL+ L  +G+ P  F  L EF 
Sbjct: 368  DLSVVRGAEDPLARLHAHIRNTQHRVLLLAESDGRRESLLDFLRASGVNPPAFDSLAEFE 427

Query: 419  -ASDSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQ-DVLIK 476
             A D   G+  A L +G      +  +  V ETELF    +  RRR KQ Q+S  + LIK
Sbjct: 428  GADDEKVGIATAGLTVG--FSWIEDGIDFVTETELFAAGPTT-RRRKKQEQVSDVEALIK 484

Query: 477  NLAELKVGQPVVHLEHGVGLYQGLETLDTGG-------LVAEYLKLEYAGGDKLYVPVSA 529
            +LAEL VG PVVH  HG+G Y+GL  +D G         + E+L LEYA    LYVPVS 
Sbjct: 485  DLAELNVGDPVVHSAHGIGRYRGLVNMDVGNKNPDGTPAMQEFLHLEYADKAVLYVPVSQ 544

Query: 530  LHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTL 589
            L LISR+   + + APL++LG+  W KAKRKA E++RD AAELL++YARR  R G     
Sbjct: 545  LQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRALRQGHAFRY 604

Query: 590  DEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLA 649
               +Y  FA  F F+ET DQ  AI AVI DM  P+ MDRLVCGDVGFGKTEVA+RAAF+A
Sbjct: 605  SPQDYETFANDFGFDETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVA 664

Query: 650  VSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVD 709
            V+ GKQV  L PTTLLA+QH++   DRF+ WPV++  +SRFR+ KE  + +  +G+G VD
Sbjct: 665  VTGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEITSAIKGIGDGTVD 724

Query: 710  IVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNM 769
            IV+GTHKLL+    F +LGLLIIDEEHRFGVR KE++KA+RA VD+LTLTATPIPRTL M
Sbjct: 725  IVVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGM 784

Query: 770  AMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKA 829
            A+ G+RDLS+IAT P +RLA+KTFVR      +REA+LRE+ RGGQVY+LHN+VETIE  
Sbjct: 785  ALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENR 844

Query: 830  AQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILI 889
             Q + E+LPEAR+  AHGQM ERELERVM DF  QR+N+L+C+TIIETGIDVP+ANTI++
Sbjct: 845  RQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIM 904

Query: 890  DRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFML 949
             RAD FGLAQLHQLRGRVGRSHHQAYAYLM P  + +T  A +RL+AI  +E+LG+GF L
Sbjct: 905  SRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYL 964

Query: 950  ATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEID 1009
            A  DLEIRGAGE+LG+ QSG++ ++GF LY EML  AVK+LK GKEP L   L    +I+
Sbjct: 965  AMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLNEAVKSLKAGKEPDLLSPLSVTTDIN 1024

Query: 1010 LRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTV 1069
            L  PALLPDDY  DV++RLS YK++A   T   +D +  E++DRFG LP   + L+ +  
Sbjct: 1025 LHAPALLPDDYCGDVHLRLSFYKKLATAKTPDQIDGLLEEIVDRFGKLPPQAQTLIDVHR 1084

Query: 1070 QKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPC 1129
             +  +   G  K++      +I F  +  +DP  II L+     + ++ G  KLR     
Sbjct: 1085 LRVLSQPYGVVKVDAAPGVINITFKPQPPIDPMRIIELIQKNKHI-KLAGNEKLRIEREL 1143

Query: 1130 ETAKERLELLELLLEQLEQ 1148
            +  K+R +++  +L  L Q
Sbjct: 1144 KDPKDRAQMVRDVLRSLGQ 1162