Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans MT42

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 594/1144 (51%), Positives = 793/1144 (69%), Gaps = 13/1144 (1%)

Query: 9    LPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPR 68
            LP +P + R      P G ARAL LAE   ++ G  ++V  DT  A  LEAEL       
Sbjct: 10   LPTSPKQRRYWTP--PHGSARALLLAEAARAHGGLLVVVARDTQRAQALEAELKIFAG-- 65

Query: 69   GIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFL 128
            G+ +  FPD ETLPYD FSPH +++SQR+ TL  L   K  +++VP+ TLM R+ P + +
Sbjct: 66   GLPVLHFPDWETLPYDVFSPHPEIVSQRVATLYRLPGVKRGVLVVPVATLMQRIAPHSHI 125

Query: 129  AANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIE 188
              + L+L KG +  L   ++ L  +GY  V QV E G+FA+RG++LDIFP G +EP RIE
Sbjct: 126  TGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIE 185

Query: 189  LFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAE 248
            LFDDEVESIR FDPETQRS   VD + +LPAREFP   +A + FR   R  F  ++    
Sbjct: 186  LFDDEVESIRSFDPETQRSQQPVDRVELLPAREFPLTEEAAKEFRGNLRERFP-IDVRRC 244

Query: 249  SVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRY 308
             +YQ +   + P GIE YLPLFF  TATLFDYL ++   +      +AA+    +   RY
Sbjct: 245  PLYQDMKEGVTPGGIEYYLPLFFAQTATLFDYLADDALFVLGEGAGEAADQFWAQTAERY 304

Query: 309  EDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDL--SGDEGDKTLEAAPLPDIRANHK 366
            + R  D  RP+LPP  LY   E+L  R     R+++   G E        P P++  N K
Sbjct: 305  DQRAHDIERPVLPPAELYLPPEQLRERLNKRLRVEVVEPGHEHAVDTGTQPAPELPLNRK 364

Query: 367  LKQPLESLANW-AQGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPH- 424
             ++P  SL ++ A    R+   A+S GRREAL+E L  AG+KP        FLA D+   
Sbjct: 365  GEEPGTSLRHFLASYPGRVLIAADSAGRREALVETLAGAGMKPDNVDGWTSFLAEDAQRF 424

Query: 425  GLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQD--VLIKNLAELK 482
             + +A L  G  L   K  + V+ E EL+GERV  ER R ++R  ++D   +I++L EL 
Sbjct: 425  AITIASLEQGFALT--KPAITVLTERELYGERVRSERERKRRRGTARDPEAIIRDLTELT 482

Query: 483  VGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDE 542
             G P+VH++HGVG YQGL ++D GG+  E+L +EYA GDKLYVPV+ L L+SR++    E
Sbjct: 483  PGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLVSRYSGTAPE 542

Query: 543  SAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFP 602
             APL+ LG ++W +A+RKA EK+RDVAAELL +YA+R+AR G+   +D     +F   FP
Sbjct: 543  LAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSSFP 602

Query: 603  FEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPT 662
            FEET DQE+AI+AV+DD+  P+AMDR++CGDVGFGKTEVA+RAAF   ++G+QV VLVPT
Sbjct: 603  FEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVPT 662

Query: 663  TLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTEL 722
            TLLAQQH+ NF DRFADWPVR++V+SRF++AKE    L  + +G++D+++GTHKLL  ++
Sbjct: 663  TLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLQPDV 722

Query: 723  NFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 782
             F++LGL+I+DEE RFGVRQKE++K +RA VD+LT+TATPIPRTLNMAM+G+RDLS+IAT
Sbjct: 723  KFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIAT 782

Query: 783  PPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARV 842
            PPA R AV+TF+  +D AT+REA+ RE+ RGGQVY+LHN+V++IE+  +++ EL+P+AR+
Sbjct: 783  PPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVPDARI 842

Query: 843  VTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQ 902
              AHGQM ERELE VM+DF+ QRFNVLVCTTIIETGID+P+ANTI+IDRAD FGLAQLHQ
Sbjct: 843  RIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQ 902

Query: 903  LRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGEL 962
            LRGRVGRSHH+AYAYL+ P  + +T DA+KRLEA+ +LE+LGAGF LAT DLEIRGAGEL
Sbjct: 903  LRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGEL 962

Query: 963  LGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVN 1022
            LGDEQSG I +IGF LY E+L+ AV+ALK GK P        + E++L +PAL+PDDY+ 
Sbjct: 963  LGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLP 1022

Query: 1023 DVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKI 1082
            DV+ RL+LYKRIA   +E  + +++VE+IDRFGLLP+ TR L  +   K  AT LG  K+
Sbjct: 1023 DVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLGIRKL 1082

Query: 1083 EMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLELL 1142
            +    GG I F E+  V+P  II L+  QP+VY++DG +KL+  +    A ER+   + L
Sbjct: 1083 DFGANGGRIVFREKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERIRSAQEL 1142

Query: 1143 LEQL 1146
            L  L
Sbjct: 1143 LVML 1146