Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1147 a.a., transcription-repair coupling factor from Rahnella sp. WP5

 Score = 1297 bits (3356), Expect = 0.0
 Identities = 679/1150 (59%), Positives = 843/1150 (73%), Gaps = 18/1150 (1%)

Query: 9    LPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPR 68
            LP+ P   R+       G A AL  A+++  + G  L++  D   AL L  E+      +
Sbjct: 9    LPERPGDNRLLGQLT--GSACALECAQISERHTGPILLIAPDMQNALRLRDEIQQFTDNK 66

Query: 69   GIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFL 128
             + I    D ETLPYDSFSPHQ++IS RL +L  L   +  ++I+P+ TLM R+ P  FL
Sbjct: 67   VLSIA---DWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPHEFL 123

Query: 129  AANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIE 188
              + L++KKG +    ++R  L   GY  V+QV EHGEFA RG++LD++P G+ EP RI+
Sbjct: 124  HGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPYRID 183

Query: 189  LFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAE 248
             FDDE++S+R FD +TQR+  EV+ I +LPA EFPTD  AIE FR ++R  FE V   AE
Sbjct: 184  FFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFE-VRRDAE 242

Query: 249  SVYQLVSRNLMPAGIENYLPLFFDDT-ATLFDYLPEELQIITTGALHQAAEHHLGEIHSR 307
             VYQ VS+   PAGIE + PLFF     TLF YLPE   ++ TG L  AAE    +   R
Sbjct: 243  HVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDACQR 302

Query: 308  YEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDLSGDEGDK-----TLEAAPLPDIR 362
            YE R+VDP+RPLL P+ L+   E LF   K +PR+ L  D   K      L    LPD+ 
Sbjct: 303  YESRRVDPMRPLLEPENLWLRVESLFTELKAWPRVQLRTDSLPKKAANTNLSYEKLPDLS 362

Query: 363  ANHKLKQPLESLANWAQG-GQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASD 421
               + K P+++L  + +     + F  ESEGRRE L +LL +  L P L   ++E  A  
Sbjct: 363  VQPQNKAPMDNLRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEE--ADI 420

Query: 422  SPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAEL 481
            +   +++     G        QLA++CE++L GERV++ RR+D +R ++ D LI+NLAEL
Sbjct: 421  AGRYIMIGACERG--FLDADKQLALICESDLLGERVAR-RRQDSRRSINTDTLIRNLAEL 477

Query: 482  KVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGND 541
            + GQPVVH+EHGVG Y GL TL+TGG+ AEYL L YAG DKLYVPVS+LHLISR+A G D
Sbjct: 478  RPGQPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSLHLISRYAGGAD 537

Query: 542  ESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGF 601
            ESAPL++LG E+WSKA++KA EK+RDVAAELLD+YA+REA+ G     D+A+Y  F Q F
Sbjct: 538  ESAPLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHDKAQYQLFCQAF 597

Query: 602  PFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVP 661
            PFE T DQ  AI AV+ DM QP AMDRLVCGDVGFGKTEVAMRAAFLAVS+ KQV VLVP
Sbjct: 598  PFETTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVP 657

Query: 662  TTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTE 721
            TTLLAQQHF+NF+DRFA WPVRIE+MSRFR+AKEQ  VL    EGKVDI+IGTHKLL T+
Sbjct: 658  TTLLAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGTHKLLQTD 717

Query: 722  LNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 781
            L ++ LGLLI+DEEHRFGVR KERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIA
Sbjct: 718  LRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 777

Query: 782  TPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEAR 841
            TPPA+R+AVKTFVREYD   VREAILREILRGGQVYYL+N VE IEKA+Q + EL+PEAR
Sbjct: 778  TPPARRMAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKASQRLAELVPEAR 837

Query: 842  VVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLH 901
            +   HGQMRER+LERVM+DF+HQRFNVLVCTTIIETGID+P+ANTI+I+RADHFGLAQLH
Sbjct: 838  IAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897

Query: 902  QLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGE 961
            QLRGRVGRSHHQAYAYL+TP PK M+ DA KRLEAI +LEDLGAGF LAT DLEIRGAGE
Sbjct: 898  QLRGRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGE 957

Query: 962  LLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYV 1021
            LLG+ QSG ++ IGFSLYME+LE AV+ALK+G+EPSL  +  +Q E+++R+PALLP+D++
Sbjct: 958  LLGEGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFI 1017

Query: 1022 NDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATK 1081
             DVN RLSLYKRIA   TE  +DE++VELIDRFG LPD  RNLL + V + +A  LG  +
Sbjct: 1018 PDVNTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDGARNLLLIAVLRLKAKELGIRR 1077

Query: 1082 IEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLEL 1141
            IE + RGG IEFG+++RVDPGF+IGLL  QPQVYR+DGP KL+F +      +RL+ +  
Sbjct: 1078 IEGNERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFVLDLTDRPKRLKFVGD 1137

Query: 1142 LLEQLEQHSV 1151
            +L +  +H +
Sbjct: 1138 MLSEFTEHLI 1147